SILENT_MODE BLOCK_FILE jp_bfAgEx6.concise.blc MAX_NSEQ 729 MAX_INPUT_LEN 731 OUTPUT_FILE jp_bfAgEx6.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 102 718 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 719 102 728 H SPACE SUB_CHARS 1 719 102 728 E SPACE SUB_CHARS 1 719 102 728 - SPACE STRAND 35 722 38 COLOUR_TEXT_REGION 35 722 38 722 51 STRAND 48 722 52 COLOUR_TEXT_REGION 48 722 52 722 51 STRAND 57 722 62 COLOUR_TEXT_REGION 57 722 62 722 51 HELIX 6 722 15 COLOUR_TEXT_REGION 6 722 15 722 50 HELIX 18 722 23 COLOUR_TEXT_REGION 18 722 23 722 50 HELIX 68 722 77 COLOUR_TEXT_REGION 68 722 77 722 50 HELIX 81 722 92 COLOUR_TEXT_REGION 81 722 92 722 50 STRAND 27 727 30 COLOUR_TEXT_REGION 27 727 30 727 51 STRAND 35 727 37 COLOUR_TEXT_REGION 35 727 37 727 51 STRAND 48 727 52 COLOUR_TEXT_REGION 48 727 52 727 51 STRAND 57 727 62 COLOUR_TEXT_REGION 57 727 62 727 51 HELIX 6 727 14 COLOUR_TEXT_REGION 6 727 14 727 50 HELIX 18 727 23 COLOUR_TEXT_REGION 18 727 23 727 50 HELIX 69 727 77 COLOUR_TEXT_REGION 69 727 77 727 50 HELIX 81 727 92 COLOUR_TEXT_REGION 81 727 92 727 50 STRAND 35 728 38 COLOUR_TEXT_REGION 35 728 38 728 51 STRAND 48 728 52 COLOUR_TEXT_REGION 48 728 52 728 51 STRAND 57 728 61 COLOUR_TEXT_REGION 57 728 61 728 51 HELIX 6 728 16 COLOUR_TEXT_REGION 6 728 16 728 50 HELIX 18 728 24 COLOUR_TEXT_REGION 18 728 24 728 50 HELIX 68 728 76 COLOUR_TEXT_REGION 68 728 76 728 50 HELIX 81 728 92 COLOUR_TEXT_REGION 81 728 92 728 50