SILENT_MODE
BLOCK_FILE jp_pp5f7iI.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_pp5f7iI.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 109 34   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 35 109 44 H SPACE
SUB_CHARS 1 35 109 44 E SPACE
SUB_CHARS 1 35 109 44 - SPACE
STRAND 4 38 10
COLOUR_TEXT_REGION 4 38 10 38 51
STRAND 15 38 20
COLOUR_TEXT_REGION 15 38 20 38 51
STRAND 32 38 37
COLOUR_TEXT_REGION 32 38 37 38 51
STRAND 42 38 47
COLOUR_TEXT_REGION 42 38 47 38 51
STRAND 57 38 62
COLOUR_TEXT_REGION 57 38 62 38 51
STRAND 76 38 82
COLOUR_TEXT_REGION 76 38 82 38 51
STRAND 87 38 93
COLOUR_TEXT_REGION 87 38 93 38 51
STRAND 99 38 102
COLOUR_TEXT_REGION 99 38 102 38 51
STRAND 5 43 10
COLOUR_TEXT_REGION 5 43 10 43 51
STRAND 15 43 20
COLOUR_TEXT_REGION 15 43 20 43 51
STRAND 25 43 26
COLOUR_TEXT_REGION 25 43 26 43 51
STRAND 32 43 37
COLOUR_TEXT_REGION 32 43 37 43 51
STRAND 42 43 47
COLOUR_TEXT_REGION 42 43 47 43 51
STRAND 57 43 62
COLOUR_TEXT_REGION 57 43 62 43 51
STRAND 76 43 81
COLOUR_TEXT_REGION 76 43 81 43 51
STRAND 87 43 93
COLOUR_TEXT_REGION 87 43 93 43 51
STRAND 99 43 102
COLOUR_TEXT_REGION 99 43 102 43 51
STRAND 4 44 9
COLOUR_TEXT_REGION 4 44 9 44 51
STRAND 15 44 20
COLOUR_TEXT_REGION 15 44 20 44 51
STRAND 32 44 37
COLOUR_TEXT_REGION 32 44 37 44 51
STRAND 42 44 47
COLOUR_TEXT_REGION 42 44 47 44 51
STRAND 57 44 62
COLOUR_TEXT_REGION 57 44 62 44 51
STRAND 75 44 82
COLOUR_TEXT_REGION 75 44 82 44 51
STRAND 87 44 93
COLOUR_TEXT_REGION 87 44 93 44 51