QUERY : HDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ : QUERY
UniRef90_UPI0003315AAC : -DALHCLHVSRDDACLTVSFSRPLLVGPGTETLLVMVDGAPLAVEWRTPDGKKRPCYVWLCDLPAASFDDQLSQQTFRVVWMAVDAQKECVLMKGRPEAWCRDSATDEQ : UniRef90_UPI0003315AAC
UniRef90_G3VR14 : QDAIRCLHVSRNEACLTVCFSRPIIVGPGIETVMLLVDESPLPVEWRTPDGKKRPNHVWLCDLPADSFNDQDSQHSFFLMW--GDVQKECVLYKGRKESWCRDSATDEQ : UniRef90_G3VR14
UniRef90_UPI000454606C : QDAVLCLHVSRDDACLTVGFSRPLAVGPGAERLLLLVDESPLAVEWRTPDGRNGPGNVWLCDLPAASLNDQWPQHTFRLLWRGGDAQKECVLFKGRREGWCRDSATDEQ : UniRef90_UPI000454606C
UniRef90_UPI0003ABA716 : QDALRCLHVSRDEACLTVSFSRPLLVGSRTEILLLMVDDSPLIVEWRTPDGRNRPSHVWLCDLPPASLNDQLPQHTFRVIWTAGDVQKECVLLKGRQEGWCRDSTTDEQ : UniRef90_UPI0003ABA716
UniRef90_UPI0003C27077 : EPTIHCIYVNREDACLAVAFSQPVRVTPGSHGLILLADEAPLTVEWHTPDGRNHPGVIWLCDLPASALNDHWPQHTFRVIWAPGQCQKECVLFKGRKDCWYRDSVTEEQ : UniRef90_UPI0003C27077
UniRef90_UPI000388AE80 : EPTILCVYVSREDSSLAVAFSQPVVVTPGSCDLLLFADEAPLAVNWHTPDGKNRPGLMWLCDLPDSALNEHWPQHTFRVHWVGGESQKECVLFKGCRDGWCRDSVTEEQ : UniRef90_UPI000388AE80
UniRef90_H9G8T8 : EPTIRCVYVNREDTSLAVAFSHPVAIAPASHDLIIFGDESPLVVRWRTPDGRNRPGFMWLCDLPASALNDHWPQHTFRILWSEGQSQKECVLFKGHRDCWSQDSVTEEQ : UniRef90_H9G8T8
UniRef90_G3NAQ1 : EEMISCVLVSREEETVTVAFSRPVDAQPG--GLMLLLDGQPQTVEWRSVHPRFKHSPVWICDLPPGTISDVTNEHNLTVHWMERHAHRDCALYTGRTESWCRDSATDQE : UniRef90_G3NAQ1
UniRef90_H3DJU0 : EEMISCVYVSREEGRVAVAFSRPVNVRKKCVNLLLVLDGQPQRVEWRSVHPRLKHSPVWICDLPPGAISDAVNEHNLTVHWTEKRTRRDCALYTGRSQSWCRDSATDQE : UniRef90_H3DJU0
UniRef90_H2L733 : EETISCVYVSREDERVAVAFSRPIN--ARCVGLLLVLDGQPLRVEWRSVHPRFRKRFLWICDLPPGTINDVTNEHNLTVHWTGNHTHRDCALYTGRVESWCRDTATDQE : UniRef90_H2L733
UniRef90_F8W3S1 : EEMISCVYVSREGERVSVAFSKPVH--AGSVGLMLVLDGQPQQVQWRNAHPRLRHSPVWLCDLPAGSISDTSNEHNLTIHWTDKHTHRDCALYTGCAESWCRDSATDQE : UniRef90_F8W3S1
UniRef90_H3A6R2 : EESITCLYASWDMGQLVVGFSRPVNVLLESSELVLFVDGRPTPVKWQNPRKTQSYSCVWVSVLRTVGLQSGAPIMTFFCVWGGGQYNKECILYPGRTETWCRDSATDEQ : UniRef90_H3A6R2
UniRef90_Q6DIR3 : --SIRCVMVSLDEPCVSVTFSHPVEVQ---EDLILFLNNRPIFVSWRTAGRKEKRSLFWVCDLPKECINDPCCQYNFQVLWKDGEAKKECILYPGRRESWFRDSATENE : UniRef90_Q6DIR3
UniRef90_S7MGS0 : QDALRCLHVSRDEACLTVSFSRPLLVDSGMETLLLFADESPLAVEWRTPDGRNRPSPVWV------------SQDWWGIVGAGWDSQK-----SGHHEGWCRDSATDEQ : UniRef90_S7MGS0
UniRef90_UPI0003AEE91A : QDALRCLHVSRDEACLTVSFSRPLLVS-------------------------------LLCDLPAASLNDHLPQHTFRVIWTAGNAQKECVLLKGRQEGWCRDSATDEQ : UniRef90_UPI0003AEE91A
UniRef90_C3Y8M1 : --SIRCLHVCRPLNRLVATFSKHLKASAA--TLNVVKDGEVITGRWHTPRGTDTFEQVLIFEFPEHSLTPDRDQHHVTLDTEAGLVGRECVLGAGHPEVFSRD-ITESQ : UniRef90_C3Y8M1
UniRef90_T1JKS0 : ---LLCLYVNRAEHFLIVTMKKAVNLKSSCYNLKVTVDKQIVDGNWRSTSAHETVSCVWILDLPPDVLKESSKKIDVSVSGFFEETKKLTVVFKNNTESW--------- : UniRef90_T1JKS0
UniRef90_F1MGN1 : QDALRCLHVSRDEACLTVSFSRPLLVGSGMETLLLMVDESPLAVEWRTPEGRNRPSTSVTCPPPPSTIS--CPSIHF-------------------------------- : UniRef90_F1MGN1
UniRef90_G7MXC2 : QDALRCLHVSRDEACLTVSFSRPLLVGSRTEILLLMVDDSPLIVEWRTPDGRNRPSHVWVCEL---------------------------------------------- : UniRef90_G7MXC2
UniRef90_UPI0003F0CD01 : --SIRSVLICRSINRIVVCFTKPLDIVQQP--LSVSINGNLIKTSWYSASNRDVYSLVWIFQIPDTVLND----DTDAVILISDQISKHCILKKGDTECVIKDNSTPE- : UniRef90_UPI0003F0CD01
UniRef90_Q921J9 : HDVLCCLHVSREEACLSVCFSRPLIVGSKMGTLLLTVDEAPLSVEWRTPDGRNRPSHVWVS------------------------------------------------ : UniRef90_Q921J9
UniRef90_UPI0003EBFDA8 : ------------------TFSLLLSCQAQSVGLFLVLDGQPQRVEWRSVHPRFKQSPVWICNLPPGTISDITNERNLTVHWTEK------------------------- : UniRef90_UPI0003EBFDA8
UniRef90_M7BR16 : EPTILCVYVSREDSSLAVAFSQPVVVTPGSCDLLLFADEAPLAVNWRTPDGRNRPGLMW-------------------------------------------------- : UniRef90_M7BR16
UniRef90_UPI0003958C19 : ---VICVHIDREDATVAVIFSRPVRVNPECPELTATLDGSALTEPWRSGEGRPRPSHTWVTWAPDSTPRDVR------------------------------------- : UniRef90_UPI0003958C19
UniRef90_X2A7L7 : QLSLQCIQASRDLQRVLISFDQQVKIGFDGLVVDLSINGSPVNVEWLSA--KDNYSYIWFASVPSDLMNDSNSAIEITV------------------------------ : UniRef90_X2A7L7
UniRef90_K1QZ11 : ---ISCVHASRKTNQILVLLTNYIQVNHG-HQLSVNINSSPVTGEWRNVTGTNSYSIIWI------------------------------------------------- : UniRef90_K1QZ11
UniRef90_UPI00039901EE : ---IIWVHVNLEDATVAVTFSRPLWVGDG---LTLTLDGSAQEGAWRSGEGRPRPSHTWLFD----------------------------------------------- : UniRef90_UPI00039901EE
UniRef90_V9L8Y2 : --------------------------------------------------GNNSPNAIWTCSLPEGALIPINSPQNVRVIWDENGSERDCYCVE-KSDGWSRESATESQ : UniRef90_V9L8Y2
UniRef90_UPI0003593C51 : --AINLLFVSRAEKRVLLSFALPVQVGAETSIVVDCDGSSLLDVVWHNQDRDDTFSTLWISDFPDA------------------------------------------- : UniRef90_UPI0003593C51
UniRef90_V4C0L0 : ---IDSVYISRHKSCILVTFTKTLLI-SRENSINLVINGKDVEGEWLNQKQQAKYSTFWIS------------------------------------------------ : UniRef90_V4C0L0
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101------ :
OrigSeq : HDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ : OrigSeq
Jnet : ---EEEEEEE----EEEEEE-----------EEEEEE----EEEEEE---------EEEEEE-------------EEEEEEE----EEEEEEE-----EEEE------- : Jnet
jhmm : ----EEEEEE----EEEEEE----EE-----EEEEEE----EEEEEE---------EEEEEE-------------EEEEEE-----EEEEEEE-----EEEE------- : jhmm
jpssm : ---EEEEEE-----EEEEEE-----------EEEEEE----EEEEEE---------EEEEEE------------EEEEEEEE----EEEEEEE---------------- : jpssm
Lupas 14 : ------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : ------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : ------------------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : --BBBBBBBBB---BBBBBB---B-B---B--BBBBB----B-B-B-BB-----BBBBBBB-BB--BB---B--B-B-BBB----B-BBBBBB-----BBB-B-B---- : Jnet_25
Jnet_5 : ---B-BB-B------B-BBB---B-B------B-B-B--------------------BBBB-B-------------B-B----------BBB--------B-------- : Jnet_5
Jnet_0 : ------B--------B-BB---------------------------------------BB------------------B------------B----------------- : Jnet_0
Jnet Rel : 9912888741688557764143231177874589985586156766436777777348886056777667777526899981588227998853777613306777889 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.