SILENT_MODE
BLOCK_FILE jp_Ubn9A2u.concise.blc
MAX_NSEQ 961
MAX_INPUT_LEN 963
OUTPUT_FILE jp_Ubn9A2u.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 94 950   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 951 94 960 H SPACE
SUB_CHARS 1 951 94 960 E SPACE
SUB_CHARS 1 951 94 960 - SPACE
STRAND 3 954 9
COLOUR_TEXT_REGION 3 954 9 954 51
STRAND 27 954 31
COLOUR_TEXT_REGION 27 954 31 954 51
STRAND 37 954 42
COLOUR_TEXT_REGION 37 954 42 954 51
STRAND 58 954 65
COLOUR_TEXT_REGION 58 954 65 954 51
STRAND 69 954 78
COLOUR_TEXT_REGION 69 954 78 954 51
STRAND 86 954 90
COLOUR_TEXT_REGION 86 954 90 954 51
HELIX 15 954 22
COLOUR_TEXT_REGION 15 954 22 954 50
HELIX 44 954 52
COLOUR_TEXT_REGION 44 954 52 954 50
STRAND 3 959 9
COLOUR_TEXT_REGION 3 959 9 959 51
STRAND 27 959 31
COLOUR_TEXT_REGION 27 959 31 959 51
STRAND 38 959 42
COLOUR_TEXT_REGION 38 959 42 959 51
STRAND 59 959 65
COLOUR_TEXT_REGION 59 959 65 959 51
STRAND 69 959 78
COLOUR_TEXT_REGION 69 959 78 959 51
STRAND 86 959 90
COLOUR_TEXT_REGION 86 959 90 959 51
HELIX 15 959 22
COLOUR_TEXT_REGION 15 959 22 959 50
HELIX 44 959 52
COLOUR_TEXT_REGION 44 959 52 959 50
STRAND 3 960 9
COLOUR_TEXT_REGION 3 960 9 960 51
STRAND 27 960 31
COLOUR_TEXT_REGION 27 960 31 960 51
STRAND 37 960 42
COLOUR_TEXT_REGION 37 960 42 960 51
STRAND 58 960 65
COLOUR_TEXT_REGION 58 960 65 960 51
STRAND 70 960 77
COLOUR_TEXT_REGION 70 960 77 960 51
STRAND 86 960 89
COLOUR_TEXT_REGION 86 960 89 960 51
HELIX 15 960 22
COLOUR_TEXT_REGION 15 960 22 960 50
HELIX 44 960 52
COLOUR_TEXT_REGION 44 960 52 960 50
HELIX 90 960 91
COLOUR_TEXT_REGION 90 960 91 960 50