SILENT_MODE
BLOCK_FILE jp_NigWt2f.concise.blc
MAX_NSEQ 72
MAX_INPUT_LEN 74
OUTPUT_FILE jp_NigWt2f.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 79 61   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 62 79 71 H SPACE
SUB_CHARS 1 62 79 71 E SPACE
SUB_CHARS 1 62 79 71 - SPACE
STRAND 23 65 31
COLOUR_TEXT_REGION 23 65 31 65 51
STRAND 40 65 46
COLOUR_TEXT_REGION 40 65 46 65 51
HELIX 8 65 14
COLOUR_TEXT_REGION 8 65 14 65 50
HELIX 51 65 60
COLOUR_TEXT_REGION 51 65 60 65 50
HELIX 62 65 76
COLOUR_TEXT_REGION 62 65 76 65 50
STRAND 23 70 31
COLOUR_TEXT_REGION 23 70 31 70 51
STRAND 39 70 47
COLOUR_TEXT_REGION 39 70 47 70 51
HELIX 7 70 14
COLOUR_TEXT_REGION 7 70 14 70 50
HELIX 50 70 60
COLOUR_TEXT_REGION 50 70 60 70 50
HELIX 62 70 77
COLOUR_TEXT_REGION 62 70 77 70 50
STRAND 23 71 29
COLOUR_TEXT_REGION 23 71 29 71 51
STRAND 41 71 45
COLOUR_TEXT_REGION 41 71 45 71 51
HELIX 9 71 15
COLOUR_TEXT_REGION 9 71 15 71 50
HELIX 52 71 60
COLOUR_TEXT_REGION 52 71 60 71 50
HELIX 63 71 76
COLOUR_TEXT_REGION 63 71 76 71 50