SILENT_MODE BLOCK_FILE jp_nyNofhE.concise.blc MAX_NSEQ 675 MAX_INPUT_LEN 677 OUTPUT_FILE jp_nyNofhE.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 147 664 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 665 147 674 H SPACE SUB_CHARS 1 665 147 674 E SPACE SUB_CHARS 1 665 147 674 - SPACE HELIX 7 668 20 COLOUR_TEXT_REGION 7 668 20 668 50 HELIX 23 668 36 COLOUR_TEXT_REGION 23 668 36 668 50 HELIX 39 668 40 COLOUR_TEXT_REGION 39 668 40 668 50 HELIX 42 668 52 COLOUR_TEXT_REGION 42 668 52 668 50 HELIX 61 668 76 COLOUR_TEXT_REGION 61 668 76 668 50 HELIX 89 668 99 COLOUR_TEXT_REGION 89 668 99 668 50 HELIX 107 668 122 COLOUR_TEXT_REGION 107 668 122 668 50 HELIX 131 668 140 COLOUR_TEXT_REGION 131 668 140 668 50 HELIX 7 673 13 COLOUR_TEXT_REGION 7 673 13 673 50 HELIX 16 673 20 COLOUR_TEXT_REGION 16 673 20 673 50 HELIX 23 673 36 COLOUR_TEXT_REGION 23 673 36 673 50 HELIX 39 673 52 COLOUR_TEXT_REGION 39 673 52 673 50 HELIX 61 673 75 COLOUR_TEXT_REGION 61 673 75 673 50 HELIX 89 673 99 COLOUR_TEXT_REGION 89 673 99 673 50 HELIX 106 673 122 COLOUR_TEXT_REGION 106 673 122 673 50 HELIX 132 673 140 COLOUR_TEXT_REGION 132 673 140 673 50 HELIX 7 674 20 COLOUR_TEXT_REGION 7 674 20 674 50 HELIX 23 674 36 COLOUR_TEXT_REGION 23 674 36 674 50 HELIX 42 674 52 COLOUR_TEXT_REGION 42 674 52 674 50 HELIX 61 674 76 COLOUR_TEXT_REGION 61 674 76 674 50 HELIX 89 674 100 COLOUR_TEXT_REGION 89 674 100 674 50 HELIX 108 674 122 COLOUR_TEXT_REGION 108 674 122 674 50 HELIX 129 674 139 COLOUR_TEXT_REGION 129 674 139 674 50