QUERY           : NLLERNRKLLREFPFNREILLVRSHIFVELVDLLTRRLTEIDGTFYYAGPNGVVEFLDDRMRIYGDAPEIENLLTQWESCGYRSFEYLMLHVGYNAFSHISCSI : QUERY 
UniRef90_B9KAS4 : -----------DFPFQKAIRVPRLQVFVELVDLLTRRLAEMNGIFYYAGPEGTVEFLNGEMRIYGRAPEIESLLSQWEECGYRSFEHLMLHIGYNAVSYISCTI : UniRef90_B9KAS4

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101- :
OrigSeq         : NLLERNRKLLREFPFNREILLVRSHIFVELVDLLTRRLTEIDGTFYYAGPNGVVEFLDDRMRIYGDAPEIENLLTQWESCGYRSFEYLMLHVGYNAFSHISCSI : OrigSeq

Jnet            : --HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH----EEEEE----EEEEE---EEEE-----HHHHHHHHH-----HHHHHHHEE-----EEEEE-- : Jnet
jhmm            : --HHHHHHHH------HHEEEHHHHHHHHHHHHHHHHHHH---EEEE-----EEEEE---EEEE-----HHHHHHHHH-----HHHHHHHHH-----EEEEE-- : jhmm
jpssm           : ---HHHHHHHH------HHHHHHHHHHHHHHHHHHHHH----EEEEEE----EEEEE--EEEEE-----HHHHHHHHH-------EEEEEEE-----EEEEE-- : jpssm

Lupas 14        : -------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : -------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : -------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : --B-----BB--B-B---B-BBBB-BBB-BB-BBB-BB--B-BBBBBBBB-BBB-BB---B-BBB-B--B--BB--B--BBB-BB-BBBBBBBB-BB-BB-B-- : Jnet_25
Jnet_5          : ---------B---------------B-B-BB--B---B------B-------BB--B---B-B------B---B----------B--BBB-B------------ : Jnet_5
Jnet_0          : -------------------------------------------------------------------------------------------------------- : Jnet_0
Jnet Rel        : 98178899871277100110178999999999999885229737888148854677524236515786368899875337776134322101588751466317 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.