SILENT_MODE
BLOCK_FILE jp_jwHcoST.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_jwHcoST.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 61 5   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 6 61 15 H SPACE
SUB_CHARS 1 6 61 15 E SPACE
SUB_CHARS 1 6 61 15 - SPACE
STRAND 5 9 5
COLOUR_TEXT_REGION 5 9 5 9 51
STRAND 12 9 17
COLOUR_TEXT_REGION 12 9 17 9 51
STRAND 43 9 47
COLOUR_TEXT_REGION 43 9 47 9 51
STRAND 55 9 57
COLOUR_TEXT_REGION 55 9 57 9 51
STRAND 4 14 5
COLOUR_TEXT_REGION 4 14 5 14 51
STRAND 12 14 17
COLOUR_TEXT_REGION 12 14 17 14 51
STRAND 43 14 46
COLOUR_TEXT_REGION 43 14 46 14 51
STRAND 55 14 57
COLOUR_TEXT_REGION 55 14 57 14 51
STRAND 43 15 47
COLOUR_TEXT_REGION 43 15 47 15 51
STRAND 54 15 58
COLOUR_TEXT_REGION 54 15 58 15 51
HELIX 11 15 17
COLOUR_TEXT_REGION 11 15 17 15 50