SILENT_MODE BLOCK_FILE jp_5D7XvRT.concise.blc MAX_NSEQ 419 MAX_INPUT_LEN 421 OUTPUT_FILE jp_5D7XvRT.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 152 408 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 409 152 418 H SPACE SUB_CHARS 1 409 152 418 E SPACE SUB_CHARS 1 409 152 418 - SPACE STRAND 64 412 65 COLOUR_TEXT_REGION 64 412 65 412 51 STRAND 111 412 112 COLOUR_TEXT_REGION 111 412 112 412 51 HELIX 8 412 14 COLOUR_TEXT_REGION 8 412 14 412 50 HELIX 41 412 52 COLOUR_TEXT_REGION 41 412 52 412 50 HELIX 68 412 78 COLOUR_TEXT_REGION 68 412 78 412 50 HELIX 85 412 96 COLOUR_TEXT_REGION 85 412 96 412 50 HELIX 99 412 107 COLOUR_TEXT_REGION 99 412 107 412 50 HELIX 124 412 144 COLOUR_TEXT_REGION 124 412 144 412 50 STRAND 64 417 66 COLOUR_TEXT_REGION 64 417 66 417 51 STRAND 111 417 112 COLOUR_TEXT_REGION 111 417 112 417 51 HELIX 41 417 51 COLOUR_TEXT_REGION 41 417 51 417 50 HELIX 68 417 78 COLOUR_TEXT_REGION 68 417 78 417 50 HELIX 85 417 96 COLOUR_TEXT_REGION 85 417 96 417 50 HELIX 99 417 107 COLOUR_TEXT_REGION 99 417 107 417 50 HELIX 124 417 143 COLOUR_TEXT_REGION 124 417 143 417 50 STRAND 63 418 64 COLOUR_TEXT_REGION 63 418 64 418 51 STRAND 111 418 113 COLOUR_TEXT_REGION 111 418 113 418 51 HELIX 7 418 17 COLOUR_TEXT_REGION 7 418 17 418 50 HELIX 41 418 52 COLOUR_TEXT_REGION 41 418 52 418 50 HELIX 65 418 65 COLOUR_TEXT_REGION 65 418 65 418 50 HELIX 68 418 78 COLOUR_TEXT_REGION 68 418 78 418 50 HELIX 85 418 97 COLOUR_TEXT_REGION 85 418 97 418 50 HELIX 99 418 107 COLOUR_TEXT_REGION 99 418 107 418 50 HELIX 123 418 145 COLOUR_TEXT_REGION 123 418 145 418 50