SILENT_MODE
BLOCK_FILE jp_oB_NVC1.concise.blc
MAX_NSEQ 145
MAX_INPUT_LEN 147
OUTPUT_FILE jp_oB_NVC1.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 70 134   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 135 70 144 H SPACE
SUB_CHARS 1 135 70 144 E SPACE
SUB_CHARS 1 135 70 144 - SPACE
STRAND 35 138 36
COLOUR_TEXT_REGION 35 138 36 138 51
STRAND 38 138 47
COLOUR_TEXT_REGION 38 138 47 138 51
STRAND 55 138 61
COLOUR_TEXT_REGION 55 138 61 138 51
HELIX 7 138 29
COLOUR_TEXT_REGION 7 138 29 138 50
STRAND 39 143 46
COLOUR_TEXT_REGION 39 143 46 143 51
STRAND 55 143 61
COLOUR_TEXT_REGION 55 143 61 143 51
HELIX 7 143 29
COLOUR_TEXT_REGION 7 143 29 143 50
STRAND 34 144 48
COLOUR_TEXT_REGION 34 144 48 144 51
STRAND 55 144 61
COLOUR_TEXT_REGION 55 144 61 144 51
HELIX 7 144 16
COLOUR_TEXT_REGION 7 144 16 144 50
HELIX 21 144 29
COLOUR_TEXT_REGION 21 144 29 144 50