SILENT_MODE
BLOCK_FILE jp_DD8MtsE.concise.blc
MAX_NSEQ 309
MAX_INPUT_LEN 311
OUTPUT_FILE jp_DD8MtsE.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 72 298   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 299 72 308 H SPACE
SUB_CHARS 1 299 72 308 E SPACE
SUB_CHARS 1 299 72 308 - SPACE
STRAND 10 302 12
COLOUR_TEXT_REGION 10 302 12 302 51
STRAND 52 302 57
COLOUR_TEXT_REGION 52 302 57 302 51
HELIX 15 302 24
COLOUR_TEXT_REGION 15 302 24 302 50
HELIX 41 302 44
COLOUR_TEXT_REGION 41 302 44 302 50
STRAND 10 307 12
COLOUR_TEXT_REGION 10 307 12 307 51
STRAND 52 307 57
COLOUR_TEXT_REGION 52 307 57 307 51
STRAND 64 307 71
COLOUR_TEXT_REGION 64 307 71 307 51
HELIX 15 307 24
COLOUR_TEXT_REGION 15 307 24 307 50
HELIX 40 307 44
COLOUR_TEXT_REGION 40 307 44 307 50
STRAND 5 308 5
COLOUR_TEXT_REGION 5 308 5 308 51
STRAND 11 308 12
COLOUR_TEXT_REGION 11 308 12 308 51
STRAND 42 308 44
COLOUR_TEXT_REGION 42 308 44 308 51
STRAND 52 308 57
COLOUR_TEXT_REGION 52 308 57 308 51
HELIX 15 308 24
COLOUR_TEXT_REGION 15 308 24 308 50