SILENT_MODE BLOCK_FILE jp_cpH9EDF.concise.blc MAX_NSEQ 755 MAX_INPUT_LEN 757 OUTPUT_FILE jp_cpH9EDF.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 247 744 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 745 247 754 H SPACE SUB_CHARS 1 745 247 754 E SPACE SUB_CHARS 1 745 247 754 - SPACE STRAND 4 748 9 COLOUR_TEXT_REGION 4 748 9 748 51 STRAND 20 748 23 COLOUR_TEXT_REGION 20 748 23 748 51 STRAND 53 748 55 COLOUR_TEXT_REGION 53 748 55 748 51 STRAND 81 748 82 COLOUR_TEXT_REGION 81 748 82 748 51 STRAND 178 748 182 COLOUR_TEXT_REGION 178 748 182 748 51 STRAND 211 748 218 COLOUR_TEXT_REGION 211 748 218 748 51 STRAND 223 748 228 COLOUR_TEXT_REGION 223 748 228 748 51 HELIX 31 748 45 COLOUR_TEXT_REGION 31 748 45 748 50 HELIX 61 748 71 COLOUR_TEXT_REGION 61 748 71 748 50 HELIX 99 748 105 COLOUR_TEXT_REGION 99 748 105 748 50 HELIX 108 748 114 COLOUR_TEXT_REGION 108 748 114 748 50 HELIX 129 748 144 COLOUR_TEXT_REGION 129 748 144 748 50 HELIX 153 748 170 COLOUR_TEXT_REGION 153 748 170 748 50 HELIX 186 748 194 COLOUR_TEXT_REGION 186 748 194 748 50 HELIX 233 748 244 COLOUR_TEXT_REGION 233 748 244 748 50 STRAND 3 753 9 COLOUR_TEXT_REGION 3 753 9 753 51 STRAND 20 753 23 COLOUR_TEXT_REGION 20 753 23 753 51 STRAND 53 753 56 COLOUR_TEXT_REGION 53 753 56 753 51 STRAND 80 753 82 COLOUR_TEXT_REGION 80 753 82 753 51 STRAND 178 753 182 COLOUR_TEXT_REGION 178 753 182 753 51 STRAND 211 753 218 COLOUR_TEXT_REGION 211 753 218 753 51 STRAND 223 753 228 COLOUR_TEXT_REGION 223 753 228 753 51 HELIX 31 753 45 COLOUR_TEXT_REGION 31 753 45 753 50 HELIX 60 753 72 COLOUR_TEXT_REGION 60 753 72 753 50 HELIX 99 753 105 COLOUR_TEXT_REGION 99 753 105 753 50 HELIX 108 753 114 COLOUR_TEXT_REGION 108 753 114 753 50 HELIX 128 753 145 COLOUR_TEXT_REGION 128 753 145 753 50 HELIX 153 753 170 COLOUR_TEXT_REGION 153 753 170 753 50 HELIX 185 753 195 COLOUR_TEXT_REGION 185 753 195 753 50 HELIX 235 753 244 COLOUR_TEXT_REGION 235 753 244 753 50 STRAND 4 754 9 COLOUR_TEXT_REGION 4 754 9 754 51 STRAND 20 754 22 COLOUR_TEXT_REGION 20 754 22 754 51 STRAND 53 754 53 COLOUR_TEXT_REGION 53 754 53 754 51 STRAND 82 754 82 COLOUR_TEXT_REGION 82 754 82 754 51 STRAND 131 754 131 COLOUR_TEXT_REGION 131 754 131 754 51 STRAND 179 754 182 COLOUR_TEXT_REGION 179 754 182 754 51 STRAND 187 754 190 COLOUR_TEXT_REGION 187 754 190 754 51 STRAND 203 754 204 COLOUR_TEXT_REGION 203 754 204 754 51 STRAND 211 754 217 COLOUR_TEXT_REGION 211 754 217 754 51 STRAND 223 754 228 COLOUR_TEXT_REGION 223 754 228 754 51 HELIX 31 754 45 COLOUR_TEXT_REGION 31 754 45 754 50 HELIX 65 754 70 COLOUR_TEXT_REGION 65 754 70 754 50 HELIX 99 754 103 COLOUR_TEXT_REGION 99 754 103 754 50 HELIX 108 754 114 COLOUR_TEXT_REGION 108 754 114 754 50 HELIX 152 754 169 COLOUR_TEXT_REGION 152 754 169 754 50 HELIX 191 754 192 COLOUR_TEXT_REGION 191 754 192 754 50 HELIX 202 754 202 COLOUR_TEXT_REGION 202 754 202 754 50 HELIX 232 754 244 COLOUR_TEXT_REGION 232 754 244 754 50