SILENT_MODE BLOCK_FILE jp_kgyD8tu.concise.blc MAX_NSEQ 1011 MAX_INPUT_LEN 1013 OUTPUT_FILE jp_kgyD8tu.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 101 1000 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1001 101 1010 H SPACE SUB_CHARS 1 1001 101 1010 E SPACE SUB_CHARS 1 1001 101 1010 - SPACE STRAND 18 1004 24 COLOUR_TEXT_REGION 18 1004 24 1004 51 STRAND 27 1004 29 COLOUR_TEXT_REGION 27 1004 29 1004 51 STRAND 34 1004 39 COLOUR_TEXT_REGION 34 1004 39 1004 51 STRAND 58 1004 63 COLOUR_TEXT_REGION 58 1004 63 1004 51 STRAND 80 1004 84 COLOUR_TEXT_REGION 80 1004 84 1004 51 HELIX 3 1004 9 COLOUR_TEXT_REGION 3 1004 9 1004 50 HELIX 45 1004 54 COLOUR_TEXT_REGION 45 1004 54 1004 50 HELIX 87 1004 98 COLOUR_TEXT_REGION 87 1004 98 1004 50 STRAND 19 1009 24 COLOUR_TEXT_REGION 19 1009 24 1009 51 STRAND 27 1009 29 COLOUR_TEXT_REGION 27 1009 29 1009 51 STRAND 34 1009 39 COLOUR_TEXT_REGION 34 1009 39 1009 51 STRAND 58 1009 63 COLOUR_TEXT_REGION 58 1009 63 1009 51 STRAND 80 1009 84 COLOUR_TEXT_REGION 80 1009 84 1009 51 HELIX 3 1009 9 COLOUR_TEXT_REGION 3 1009 9 1009 50 HELIX 45 1009 55 COLOUR_TEXT_REGION 45 1009 55 1009 50 HELIX 87 1009 99 COLOUR_TEXT_REGION 87 1009 99 1009 50 STRAND 17 1010 24 COLOUR_TEXT_REGION 17 1010 24 1010 51 STRAND 27 1010 29 COLOUR_TEXT_REGION 27 1010 29 1010 51 STRAND 34 1010 39 COLOUR_TEXT_REGION 34 1010 39 1010 51 STRAND 57 1010 63 COLOUR_TEXT_REGION 57 1010 63 1010 51 STRAND 80 1010 84 COLOUR_TEXT_REGION 80 1010 84 1010 51 HELIX 3 1010 9 COLOUR_TEXT_REGION 3 1010 9 1010 50 HELIX 45 1010 54 COLOUR_TEXT_REGION 45 1010 54 1010 50 HELIX 87 1010 98 COLOUR_TEXT_REGION 87 1010 98 1010 50