SILENT_MODE
BLOCK_FILE jp__cmrkU9.concise.blc
MAX_NSEQ 359
MAX_INPUT_LEN 361
OUTPUT_FILE jp__cmrkU9.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 114 348   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 349 114 358 H SPACE
SUB_CHARS 1 349 114 358 E SPACE
SUB_CHARS 1 349 114 358 - SPACE
STRAND 12 352 15
COLOUR_TEXT_REGION 12 352 15 352 51
STRAND 23 352 28
COLOUR_TEXT_REGION 23 352 28 352 51
HELIX 8 352 11
COLOUR_TEXT_REGION 8 352 11 352 50
HELIX 29 352 38
COLOUR_TEXT_REGION 29 352 38 352 50
HELIX 49 352 60
COLOUR_TEXT_REGION 49 352 60 352 50
HELIX 69 352 83
COLOUR_TEXT_REGION 69 352 83 352 50
HELIX 90 352 106
COLOUR_TEXT_REGION 90 352 106 352 50
STRAND 11 357 15
COLOUR_TEXT_REGION 11 357 15 357 51
STRAND 22 357 29
COLOUR_TEXT_REGION 22 357 29 357 51
HELIX 8 357 10
COLOUR_TEXT_REGION 8 357 10 357 50
HELIX 30 357 39
COLOUR_TEXT_REGION 30 357 39 357 50
HELIX 49 357 64
COLOUR_TEXT_REGION 49 357 64 357 50
HELIX 68 357 83
COLOUR_TEXT_REGION 68 357 83 357 50
HELIX 90 357 105
COLOUR_TEXT_REGION 90 357 105 357 50
STRAND 15 358 16
COLOUR_TEXT_REGION 15 358 16 358 51
STRAND 81 358 83
COLOUR_TEXT_REGION 81 358 83 358 51
HELIX 10 358 10
COLOUR_TEXT_REGION 10 358 10 358 50
HELIX 28 358 36
COLOUR_TEXT_REGION 28 358 36 358 50
HELIX 49 358 59
COLOUR_TEXT_REGION 49 358 59 358 50
HELIX 70 358 80
COLOUR_TEXT_REGION 70 358 80 358 50
HELIX 92 358 106
COLOUR_TEXT_REGION 92 358 106 358 50