SILENT_MODE
BLOCK_FILE jp_JuaJtU8.concise.blc
MAX_NSEQ 174
MAX_INPUT_LEN 176
OUTPUT_FILE jp_JuaJtU8.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 178 163   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 164 178 173 H SPACE
SUB_CHARS 1 164 178 173 E SPACE
SUB_CHARS 1 164 178 173 - SPACE
STRAND 17 167 22
COLOUR_TEXT_REGION 17 167 22 167 51
STRAND 30 167 34
COLOUR_TEXT_REGION 30 167 34 167 51
STRAND 57 167 62
COLOUR_TEXT_REGION 57 167 62 167 51
STRAND 83 167 87
COLOUR_TEXT_REGION 83 167 87 167 51
STRAND 92 167 97
COLOUR_TEXT_REGION 92 167 97 167 51
STRAND 173 167 177
COLOUR_TEXT_REGION 173 167 177 167 51
HELIX 39 167 51
COLOUR_TEXT_REGION 39 167 51 167 50
HELIX 68 167 78
COLOUR_TEXT_REGION 68 167 78 167 50
HELIX 117 167 132
COLOUR_TEXT_REGION 117 167 132 167 50
HELIX 147 167 165
COLOUR_TEXT_REGION 147 167 165 167 50
STRAND 17 172 22
COLOUR_TEXT_REGION 17 172 22 172 51
STRAND 30 172 34
COLOUR_TEXT_REGION 30 172 34 172 51
STRAND 52 172 52
COLOUR_TEXT_REGION 52 172 52 172 51
STRAND 57 172 62
COLOUR_TEXT_REGION 57 172 62 172 51
STRAND 83 172 87
COLOUR_TEXT_REGION 83 172 87 172 51
STRAND 92 172 97
COLOUR_TEXT_REGION 92 172 97 172 51
STRAND 107 172 110
COLOUR_TEXT_REGION 107 172 110 172 51
STRAND 132 172 132
COLOUR_TEXT_REGION 132 172 132 172 51
STRAND 174 172 177
COLOUR_TEXT_REGION 174 172 177 172 51
HELIX 39 172 48
COLOUR_TEXT_REGION 39 172 48 172 50
HELIX 51 172 51
COLOUR_TEXT_REGION 51 172 51 172 50
HELIX 68 172 78
COLOUR_TEXT_REGION 68 172 78 172 50
HELIX 117 172 131
COLOUR_TEXT_REGION 117 172 131 172 50
HELIX 147 172 165
COLOUR_TEXT_REGION 147 172 165 172 50
STRAND 5 173 5
COLOUR_TEXT_REGION 5 173 5 173 51
STRAND 18 173 22
COLOUR_TEXT_REGION 18 173 22 173 51
STRAND 30 173 30
COLOUR_TEXT_REGION 30 173 30 173 51
STRAND 33 173 35
COLOUR_TEXT_REGION 33 173 35 173 51
STRAND 57 173 63
COLOUR_TEXT_REGION 57 173 63 173 51
STRAND 83 173 88
COLOUR_TEXT_REGION 83 173 88 173 51
STRAND 92 173 97
COLOUR_TEXT_REGION 92 173 97 173 51
STRAND 173 173 177
COLOUR_TEXT_REGION 173 173 177 173 51
HELIX 39 173 52
COLOUR_TEXT_REGION 39 173 52 173 50
HELIX 68 173 78
COLOUR_TEXT_REGION 68 173 78 173 50
HELIX 117 173 132
COLOUR_TEXT_REGION 117 173 132 173 50
HELIX 146 173 165
COLOUR_TEXT_REGION 146 173 165 173 50