SILENT_MODE
BLOCK_FILE jp_HfAYxbp.concise.blc
MAX_NSEQ 101
MAX_INPUT_LEN 103
OUTPUT_FILE jp_HfAYxbp.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 137 90   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 91 137 100 H SPACE
SUB_CHARS 1 91 137 100 E SPACE
SUB_CHARS 1 91 137 100 - SPACE
STRAND 16 94 18
COLOUR_TEXT_REGION 16 94 18 94 51
STRAND 43 94 45
COLOUR_TEXT_REGION 43 94 45 94 51
HELIX 28 94 34
COLOUR_TEXT_REGION 28 94 34 94 50
HELIX 46 94 59
COLOUR_TEXT_REGION 46 94 59 94 50
HELIX 63 94 74
COLOUR_TEXT_REGION 63 94 74 94 50
HELIX 80 94 90
COLOUR_TEXT_REGION 80 94 90 94 50
HELIX 97 94 110
COLOUR_TEXT_REGION 97 94 110 94 50
HELIX 115 94 130
COLOUR_TEXT_REGION 115 94 130 94 50
STRAND 16 99 18
COLOUR_TEXT_REGION 16 99 18 99 51
STRAND 43 99 45
COLOUR_TEXT_REGION 43 99 45 99 51
HELIX 27 99 34
COLOUR_TEXT_REGION 27 99 34 99 50
HELIX 46 99 60
COLOUR_TEXT_REGION 46 99 60 99 50
HELIX 63 99 74
COLOUR_TEXT_REGION 63 99 74 99 50
HELIX 80 99 89
COLOUR_TEXT_REGION 80 99 89 99 50
HELIX 97 99 110
COLOUR_TEXT_REGION 97 99 110 99 50
HELIX 114 99 129
COLOUR_TEXT_REGION 114 99 129 99 50
STRAND 16 100 18
COLOUR_TEXT_REGION 16 100 18 100 51
STRAND 28 100 28
COLOUR_TEXT_REGION 28 100 28 100 51
STRAND 43 100 44
COLOUR_TEXT_REGION 43 100 44 100 51
HELIX 29 100 34
COLOUR_TEXT_REGION 29 100 34 100 50
HELIX 45 100 59
COLOUR_TEXT_REGION 45 100 59 100 50
HELIX 62 100 73
COLOUR_TEXT_REGION 62 100 73 100 50
HELIX 80 100 90
COLOUR_TEXT_REGION 80 100 90 100 50
HELIX 97 100 110
COLOUR_TEXT_REGION 97 100 110 100 50
HELIX 115 100 130
COLOUR_TEXT_REGION 115 100 130 100 50