SILENT_MODE BLOCK_FILE jp_9nZxnMk.concise.blc MAX_NSEQ 442 MAX_INPUT_LEN 444 OUTPUT_FILE jp_9nZxnMk.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 71 431 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 432 71 441 H SPACE SUB_CHARS 1 432 71 441 E SPACE SUB_CHARS 1 432 71 441 - SPACE STRAND 5 435 9 COLOUR_TEXT_REGION 5 435 9 435 51 STRAND 41 435 48 COLOUR_TEXT_REGION 41 435 48 435 51 STRAND 54 435 56 COLOUR_TEXT_REGION 54 435 56 435 51 HELIX 14 435 25 COLOUR_TEXT_REGION 14 435 25 435 50 HELIX 27 435 36 COLOUR_TEXT_REGION 27 435 36 435 50 HELIX 61 435 69 COLOUR_TEXT_REGION 61 435 69 435 50 STRAND 41 440 48 COLOUR_TEXT_REGION 41 440 48 440 51 STRAND 54 440 56 COLOUR_TEXT_REGION 54 440 56 440 51 HELIX 14 440 25 COLOUR_TEXT_REGION 14 440 25 440 50 HELIX 27 440 36 COLOUR_TEXT_REGION 27 440 36 440 50 HELIX 61 440 69 COLOUR_TEXT_REGION 61 440 69 440 50 STRAND 5 441 9 COLOUR_TEXT_REGION 5 441 9 441 51 STRAND 42 441 48 COLOUR_TEXT_REGION 42 441 48 441 51 HELIX 14 441 25 COLOUR_TEXT_REGION 14 441 25 441 50 HELIX 27 441 35 COLOUR_TEXT_REGION 27 441 35 441 50 HELIX 61 441 69 COLOUR_TEXT_REGION 61 441 69 441 50