Jpred secondary structure prediction results

QUERY           : SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT : QUERY 
UniRef90_Q9Q1T6 : SYPITSPSQFVFLSSVWADPIELLNVCTNSLGNQFQTQQARTTVQQQFSEVWEPFPQSTVRFPGDVYKVYRYNAVLDPLITALLGTFDTRNRIIEVENRQSPTTAETLDATRRVDDATVAIRSAINNLVNELVRGTGLYNQNTFESMSGLVWTSAPAS : UniRef90_Q9Q1T6
UniRef90_P69509 : AYTVSSANQLVYLGSVWADPLELQNLCTSALGNQFQTQQARTTVQQQFSDVWKTIPTATVRFPATGFKVFRYNAVLDSLVSALLGAFDTRNRIIEVENPQNPTTAETLDATRRVDDATVAIRASISNLMNELVRGTGMYNQALFESASGLTWATTP-- : UniRef90_P69509
UniRef90_P03579 : -YTINSPSQFVYLSSAYADPVQLINLCTNALGNQFQTQQARTTVQQQFADAWKPVPSMTVRFPASDFYVYRYNSTLDPLITALLNSFDTRNRIIEVDNQPAPNTTEIVNATQRVDDATVAIRASINNLANELVRGTGMFNQAGFETASGLVWTTTPAT : UniRef90_P03579
UniRef90_Q84122 : SYTITDPSKLAYLSSAWADPNSLINLCTNSLGNQFQTQQARTTVQQQFADVWQPVPTLTSRFPAGAFRVYRYEPILEPLITFLMGTFDTRNRIIEVRNPQNPTTTETLDATRRVDDATVAIRSAINNLLNELVRGNGMYNQVSFETMSGLTWTSS--- : UniRef90_Q84122
UniRef90_Q0E5F2 : AYTITAPNQIVYLGVAYADPILLMNLCTTSQGNQFQTQNARTTVQQQFADIWKAVPAVNIRFPENGFLVYRYNAVLDQLVTSLLNSFDTRNRIIEVENPPNPTNGEIMSATQRVDDATVNIRASITNLMNELVRGTGFLNRSSFESTSGLTWSTAPTT : UniRef90_Q0E5F2
UniRef90_Q7TG48 : SYTITSPSQFAFLGSSWADGLALINLCTNSLGNQFQTQNARTTVQQQFSDVWKTVASGTVRFPESAFFVYRYDPTLEPLITALLNAFDTRNRIIEVDTPAAPTTAEALNATQRVDDATVNIRACINNLASELVRGTGFYNQASFERASALVWT----- : UniRef90_Q7TG48
UniRef90_Q84842 : -YTVSSPNQLVYFGSVWADPIALIDLCTVSLGNQFQTQNARTTVQQQFSDLFKTVPTRTIRFSDNGFRVFRYNSTLDPLITALLNSFDTRNRIIETENPANPNTAEIASATQRVDDATVSIRACINNLMNELARGTGMLNTVSFETISNLTWTTAATT : UniRef90_Q84842
UniRef90_Q66222 : -YNITSSNQYQYFAAMWAEPTAMLNQCVSALSQSYQTQAARDTVRQQFSNLLSAIVTPNQRFPEAGYRVYINSAVLKPLYESLMKSFDTRNRIIETEEESRPSASEVANATQRVDDATVAIRSQIQLLLNELSNGHGLMNRAEFEVL--LPWATAPAT : UniRef90_Q66222
UniRef90_Q1XF29 : SYVVVLPNQLQFFTNAWADPIQLMNLCSASLSQIFQTQAARDAVREQFGNTLRSVVTQTTRFPEAGFQVYINDAALKPLWENLLKSFDTKNRILETEEETRPSTAEVLNATQRVDDSTTAIRGALQRLSDELNRGSGYMNRTSFETI--LLWSAATA- : UniRef90_Q1XF29
UniRef90_U5XN01 : SYAITSPKQFAYLTNAYADPIALISLCNNALGNQFQTQNARTTVQQQFNDIWKELPTQISRFPVGIYRVYRFDSTIDPLITSVLNSFDTRNRIIETENPANPSTTEVVNATQRVDDATVNIRSSINNLCNELIRGTGFLNQATFEEASQLTWTARTT- : UniRef90_U5XN01
UniRef90_Q7LZZ8 : SYSITTPSZLBYLSSAWABPKZLIBLCTBALGBSFZTZBARTTVQQQFADVWTPSPQLTVRFPAGAFRVYRYBFILBPLITPLMGTFDTRNRIIZVZBZPBPTTAZTLBTTRRVDDATVAIRSAINNLLNELVRGTGMYBZSTFZV---MGWTSSLST : UniRef90_Q7LZZ8
UniRef90_Q6QDD3 : -YLNLTPLNLIYTSGTFAPYDVFLEILVKSRSNSFQTQAGRDTLREQLINSLQIVANLNTRYPLLGFYVWVRNPTLAPVFEALLRATDTKNRIIEVEEESRPTTAETLNATQRVDDATVAIHKEIDNILLLLQGGTAVYDRTAFEVASGLSWADP--- : UniRef90_Q6QDD3
UniRef90_Q6Q4A9 : SYSNITALNLIYSSPTFAPYDVLLEILIKSRSNSFQTQAGRDILREQLVNALQTVVTPTTRFPADRWYVWSRNPTLGPVFEALLQATDTKNRTIETEEDSRPTTAETLNAAQRVDDATVAIHKEIDDILGLLQGGTAVYNQASFEIASGWTWTAPA-- : UniRef90_Q6Q4A9
UniRef90_Q77N14 : -YSTSGIRSLPAFSKSFFPYLELYNLLITNQGAALQTQNGKDILRESLVGLLSSVASPTSQFPSGVFYVWSRESRIAALIDSLFGALDSRNRAIEVENPSNPSTGEALNAVKRNDDASTAAHNDIPQILSALNEGAGVFDRASFESAFGLVWTAGSST : UniRef90_Q77N14
UniRef90_P69474 : AYNPITPSKLIAFSASYVPVRTLLNFLVASQGTAFQTQAGRDSFRESLSALPSSVVDINSRFPDAGFYAFLNGPVLRPIFVSLLSSTDTRNRVIEVVDPSNPTTAESLNAVKRTDDASTAARAEIDNLIESISKGFDVYDRASFEAAFSVVWSEATTS : UniRef90_P69474
UniRef90_E2F1P9 : SYTNISTTNIIYLARSYIPGVDFIDLIISGLGQSFQTQSARDEFRSQLIGSYKVVVSKTVRFPENTIYLWANNPTIRPLLHAVFQALDTRNRIIEVENVVNPTSSETREATRRVDDATVAVRSQLQLLFDALSGGSGLYDRKAFEDASGLVWEEAAA- : UniRef90_E2F1P9
UniRef90_A0PA54 : AYSPITPTNLSLFSSNYVPFTEFYNYLVTAQGEAFQTQQGRDSVRDSLSGFFSSPVSPTVRFPDGVFYVFLGNPVLDPLFKALLQSLDTRNRVIEVDNPSNPTTAESLNAVQRTDDSTVSSRVGLINLRAAITQGNGVVNRSIFESSNGLTWATSGSS : UniRef90_A0PA54
UniRef90_P03581 : AYSIPTPSQLVYFTENYADYIPFVNRLINARSNSFQTQSGRDELREILIKSQVSVVSPISRFPAPAYYIYLRDPSISTVYTALLQSTDTRNRVIEVENSTNVTTAEQLNAVRRTDDASTAIHNNLEQLLSLLTNGTGVFNRTSFESASGLTWLVTTT- : UniRef90_P03581
UniRef90_F8UKG4 : -YQPVSLQTLPWLSANWADYKTLLSVLRATSATSFQTQAGRDSIRSQLAGCVSELVQVNVRFPER-YLVYVNDPSISDVWGALLKATDTKNRIIEVDNERNPSNNEIESVTRRVDDASVAIRINIERLLKLLDGVHGVYDRALFEQVSGLRWASAPAS : UniRef90_F8UKG4
UniRef90_Q70P76 : SYTNVKPNTFVYRTQSWVEPEKLLNYLTQAQLLIFQTQQARTQLANELQAQLRYGPRNDVRFPTDTFLVNTAVGTLAPAWFALAQACDTKDRIFEVGDNRGVTSAETKLATQRVDDATIAIRNAIRTCVNILVSAVDIYDRTTFEDATGWTW------ : UniRef90_Q70P76
UniRef90_A0PFL5 : -----------FLSSAWADPVELINICTNSLGNQFQTQQARTTVQQQFSEVWKPFPQSTVRFPDDVFKVYRYNAVIDPLITALLGTFDTRNRIIRVENQQSPTTAETLDATRRVDDATVAIRSAVNNLVN---------------------------- : UniRef90_A0PFL5
UniRef90_U3SXU4 : --------------------------CTSALGNQFQTQQARTTVQQQFSDVWKTIPTATVRFPATGFKVFRYNAVLHSLVSALLGAFDTRNRIIEVENPQNPTTAETLDATRRVDDATVAIRASISNLMNELVRGTGMY------------------- : UniRef90_U3SXU4
UniRef90_G9CU46 : -YINVQPKDFVYLTRSWVDPQRLIQFLSDMQTQAFQAQQSRTQLLNELSTMVVYGPTKSDRFPIDTYLINITKGGLSAYWFGLTQSADTKDRVFEVSEARAVTNAESKLATQRVDDATVAIRNAIKSTLSYLIAGEDIYSRTSFEAALGWIWQE---- : UniRef90_G9CU46
UniRef90_G9I490 : AYHTPRPNQLVYFTNAFAEYFGFVNSLQKARVNSFQTQAGRDQLREVLVNSQVSVASPTVRFPENSFYVSFVDASVSTVYNALLQSTDTRNRVIEVENSSSVSTTEQINAVRRTDDASTAIHNNLDQLLNLLAAGTGVLDRQSFESTSGLTWTAQGA- : UniRef90_G9I490
UniRef90_Q86705 : SYNITNPNQYQYFAAVWAEPIPMLNQCISALSQSYQTQAARDTVRQQFSNLLSAVVAPSQRFPETGSRVYVNSAVIKPLYEALMKSFDTRNRIIETEEESRPSASEVL-------------------------------------------------- : UniRef90_Q86705
UniRef90_F1CWG4 : ----------------------------------------------------------TGRFPGNVYKGYRYNAVLDPLITGL-GAFNTRNRIIEVENQQSPTTAETLDATRRVDDATVAIRSAINNLVNELVRGTGLYNQNTFESMSGLVWTSAPAS : UniRef90_F1CWG4
UniRef90_M4Q0I7 : ------------------------------------------------SALPSSVVDINSSFPNAGFYAFLNGPVLRPIFVSLLSSTDTRNRVIEVVDPSNPTTAESLNAVKRTEEASTAARAEIDNLIESISKGFDVYDRASFEAPFSVVWSEATT- : UniRef90_M4Q0I7
UniRef90_Q5G7A5 : -----------------------------ALGNQFQTQQARTVVQRQFSEVWKPSPQATVRFPASDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPTTAETL-------------------------------------------------- : UniRef90_Q5G7A5
UniRef90_F8ULT8 : AYTPTYALNYARVG-NWYEVSDFLDFLDAAQDAAFSVQTVRDGLRDSFNSLPRSPPSLDTRFPSDFFYISKWNQLIIQMTTALSGSKDTKSR-----TVDTTDTTFDNDVTQSFFQAIKAMKETIMQPPAN----KDLFDRDSFEKFFNLTW------ : UniRef90_F8ULT8
UniRef90_Q91KP8 : --SITTPSQFVFWSSAWG-----FIRCTGTI---------------QF--------WILYLLRAGDFRYWEW--------------------IIEVENQQSPTTAETLDATRRVDDATVAIRSAINNLFRNYLEVLDCTIR-TFESSLGCLF------ : UniRef90_Q91KP8
UniRef90_Q9IZ93 : -YNVEGWRNHIVRSRANADWSDLYDLLADLRAVNFEVNTSRSEVSAIINRVPKDLPAVSARFPGAEIYFVRIKPELKQRFLNLIAAADQKNRDIEVGRPTAPTVTNSAGGNQ----AIVAQRNAVRDLRDIELAVVDQFDQVIFEDVFKLTWTPA--- : UniRef90_Q9IZ93

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151----- :
OrigSeq         : SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT : OrigSeq

Jnet            : ---------EEEE------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------EEEEE----HHHHHHHHHHH------EEEEE-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH---EE------ : Jnet
jhmm            : ----------EEH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------EEEEEE---HHHHHHHHHHH------EEEEE-------EEE--EEEEH-HHHHHHHHHHHHHHHHHH---EEE-HHHHHHHH--EE------ : jhmm
jpssm           : ---------EEE-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------EEEEE---HHHHHHHHHHH------EEEEEE-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH---EEE----- : jpssm

Lupas 14        : -------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : -------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : -------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ------B--BBBBB-BBB-B--BB-BBB-B---BB-B--BB--B--BB--BB--BB--B--B---BBBBBBB-B-B--BB-BBB-BB----BBB-B-----B-------BB--B--BB-BB---B--BB-BB--B-BBBBB-BBB-BB-B-B------ : Jnet_25
Jnet_5          : ---------BB--B--------BB--B----------------B---B------------------B-B---------BB--B--B------B-----------------------B---B---B--B---B--B---B----B-----B-------- : Jnet_5
Jnet_0          : ----------------------B---B-----------------------------------------B-----------------------------------------------B----------------------------------------- : Jnet_0
Jnet Rel        : 99888775301205777745789999999874378755341799999874027777776545777448874076278999998611688851688605788763223424333739999999998768998751673236131444217536016899 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.