SILENT_MODE
BLOCK_FILE jp_4cIaNEj.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_4cIaNEj.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 208 29   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 30 208 39 H SPACE
SUB_CHARS 1 30 208 39 E SPACE
SUB_CHARS 1 30 208 39 - SPACE
STRAND 10 33 10
COLOUR_TEXT_REGION 10 33 10 33 51
STRAND 59 33 62
COLOUR_TEXT_REGION 59 33 62 33 51
STRAND 74 33 84
COLOUR_TEXT_REGION 74 33 84 33 51
STRAND 93 33 106
COLOUR_TEXT_REGION 93 33 106 33 51
STRAND 144 33 150
COLOUR_TEXT_REGION 144 33 150 33 51
STRAND 164 33 171
COLOUR_TEXT_REGION 164 33 171 33 51
STRAND 181 33 183
COLOUR_TEXT_REGION 181 33 183 33 51
STRAND 198 33 206
COLOUR_TEXT_REGION 198 33 206 33 51
HELIX 29 33 34
COLOUR_TEXT_REGION 29 33 34 33 50
HELIX 41 33 53
COLOUR_TEXT_REGION 41 33 53 33 50
HELIX 111 33 127
COLOUR_TEXT_REGION 111 33 127 33 50
HELIX 184 33 186
COLOUR_TEXT_REGION 184 33 186 33 50
STRAND 9 38 10
COLOUR_TEXT_REGION 9 38 10 38 51
STRAND 59 38 62
COLOUR_TEXT_REGION 59 38 62 38 51
STRAND 74 38 84
COLOUR_TEXT_REGION 74 38 84 38 51
STRAND 93 38 106
COLOUR_TEXT_REGION 93 38 106 38 51
STRAND 131 38 133
COLOUR_TEXT_REGION 131 38 133 38 51
STRAND 144 38 150
COLOUR_TEXT_REGION 144 38 150 38 51
STRAND 161 38 171
COLOUR_TEXT_REGION 161 38 171 38 51
STRAND 181 38 185
COLOUR_TEXT_REGION 181 38 185 38 51
STRAND 191 38 191
COLOUR_TEXT_REGION 191 38 191 38 51
STRAND 198 38 206
COLOUR_TEXT_REGION 198 38 206 38 51
HELIX 29 38 34
COLOUR_TEXT_REGION 29 38 34 38 50
HELIX 41 38 53
COLOUR_TEXT_REGION 41 38 53 38 50
HELIX 111 38 127
COLOUR_TEXT_REGION 111 38 127 38 50
STRAND 58 39 63
COLOUR_TEXT_REGION 58 39 63 39 51
STRAND 74 39 84
COLOUR_TEXT_REGION 74 39 84 39 51
STRAND 93 39 107
COLOUR_TEXT_REGION 93 39 107 39 51
STRAND 144 39 149
COLOUR_TEXT_REGION 144 39 149 39 51
STRAND 164 39 172
COLOUR_TEXT_REGION 164 39 172 39 51
STRAND 180 39 180
COLOUR_TEXT_REGION 180 39 180 39 51
STRAND 199 39 206
COLOUR_TEXT_REGION 199 39 206 39 51
HELIX 29 39 34
COLOUR_TEXT_REGION 29 39 34 39 50
HELIX 42 39 53
COLOUR_TEXT_REGION 42 39 53 39 50
HELIX 111 39 128
COLOUR_TEXT_REGION 111 39 128 39 50
HELIX 181 39 187
COLOUR_TEXT_REGION 181 39 187 39 50