Jpred secondary structure prediction results

QUERY                  : SRLADFLGFRPKTGDIDVMNRQSVGSVTISQLAKGFYEPNIESAINDVHNFSIKDVGTIITNKTGVSPEGVSQTDYWAFSGTVTDDSLPPGSPITVLVFGLPVSATTGMTAIEFVAKVRVALQEAIASFTAINSYKDHPTDGSKLEVTYLDNQKHVLSTYSTYGITISQEIISESKPGYGTWNLLGAQTVTLDNQQTPTVFYHFERTA : QUERY 
UniRef90_C3V2E6        : SRLADFLGFRTKKNDISVMNNQPVGAVTISQIAKGFYDPNVESAINDVRNMAEQQVGAVLVNISGVSPTGVQQTDYWSFEGTVTDTSAKPGDPVIVNMFGIPVKATNGMTSIEFTSAVRTALQEMVAKFIAIDSFEDHPTIGNKIQVKYLDNQEHILEQYSDKGITFKQEIISPSKPGYGTWQLLGAQTVTLDSHTQPTVFYYFERIA : UniRef90_C3V2E6
UniRef90_E5EPV2        : SRDASFHKFATKHESIIIGNNQPYGSPTINQTLQGIHYANTQSAIDDCVAMFEMPKGACIINTTGVSPAAISQVDDFTFVGNVSIPGATVGSTAIIDFYGFPVTVTQGDTGEEVASKVKIALETA-ASQNHVFSSVGFGSTLDILQIRYIDGQTHILPQTSTFGVKVTQTIASPAKPGYGVWRRIGTETKTLDGAATPITLYYFEREA : UniRef90_E5EPV2
UniRef90_Q7Y4X6        : SREADFLGFRKNPTQIDILNNQGVGSVTISQLAKGFYDDNVESAINDVHNIARADVGTVTINTSGVSPEGTSQVDYWSFSGSVTDPSLPDGSPVIVKVYGLPVNATVGMTADEFVVQLRTTLRNAISDQLAIAEYKDDPTVGTKLQITYLDNQRHVLPTYSSYGITVSQEIVSQAKSGYGTWNLLGAQTITLDSHTSPTTFYYFVRTA : UniRef90_Q7Y4X6
UniRef90_UPI00046C0368 : SRHADFLNYRKNPAQIDVLNNQAVGSVTISQLARGFYDANVESAINDVHNMARADIGTVVTNTSGVSPEGTAQVDYWTFSGDVLDDTLTTGTPVVINVFGLAVKATIGMTDNELTAQVRIALQEAIANQIAISSYKDHPSEGNKLQVTYLDNQRHVLPTYASFGVTISQEILSEAKSGYGTWNLLGAQTVTLDNHDTPTVFYHFVRAS : UniRef90_UPI00046C0368
UniRef90_K4F9Y2        : SREADFLQYEMGSKLPLIGGKRTIGGANVDQLRKGVEYPNVQSAIDDLYSLSEQPINGVVTMAEDNSPSAVQQVESITFDGTVQNPD-PDQTKATVHVYGFPFVFDNTTNASTVCETVYNKFTEFVNDEKYFDLVTRKGLNGEILEVRFIDAVPHPVTNTSENGISMVGTIDVQAKSGYGTWSKLGQADLPVTPA---VTVYYFKRIA : UniRef90_K4F9Y2
UniRef90_G0YKE4        : SREASHHEFDVKKGSIIVGNNQPIGSPSISQSQKGIKVPNVEDAINDVASLTILPLNTIIINDDGNSPQGISQIDEFKFIGSIKDPSKQTGDEVKFDFYGFVVPVKIGDNAEEVAAKVKLELDLAKSAGIVFNRVE-NGATLDILQLTYNDVQSHELDDLVQYTMRVTQNTVSPARGGYGIWNRIGTQTITLDGTTKPTILYYFKR-- : UniRef90_G0YKE4
UniRef90_E5DIH3        : SRSAAFLQYELASGSIDVMNTQPLGSNTISQKYQGVDFPNVQSAIEDVRGFAILPIGSIVINDTGTSPEGIQQIDDWTFTGTVEFEGKTTGDSVLVDVYGFMVPALVGDTDTEFTAKVKTTLENAITAGEIISSVEVSSSAGNILNVKYIDNQEHVLPSYSSCGISISASIQSPSKVGYGSWELIGRQSLTFDGASAPTVLQYFKR-- : UniRef90_E5DIH3
UniRef90_A7XFA3        : SSDAAFISYDPGSKDPVIGGSRPIGGVNVDQSRKGSYVSNVQSAIDDLYSLSMIRIGDVLVTTNSTPPQAAGQIETLSFSGSVNNQHNPDANKVLIDVLGYPFIVDVGSSGVSLCEKVTEKFTELMNKNIMFKEVKRKGSSNDQLEIHYIDSLEHPPTDISKYGITITGNVDSPARVGYGSWSRMGTEEK------FGTTLYYFKRIA : UniRef90_A7XFA3
UniRef90_K4I2X1        : SRYSDNIQFIPSPNNNDVMSKQPYGSLTISEYSKGIEFPNVQSAINDVRNFTIRPINSIEINTDGVSPEGISQTDTWTFAGTVVKPDGATGD-AIISVFGFPVTVTVGDTAEEVTAKAKLVLEDAVLKNFIINTVSQ-GLTGAELTVSYIDNQTHVLKPETRFGITVSSTIISPAKPGYGAWTRIGTKTETLEGSADPVLLHYFKRLA : UniRef90_K4I2X1
UniRef90_D7RMG2        : SRLADFLEFSFTTNQPAVAGQRPIGGPSANQTQKGVYYPTVQSAIDDIAFRAELPVNAVVTTTENRAPGFIQQSDKLTFSGSISSGGE-LGDTVIIKVFGLPVEVIVGDSSVLVASKVNDVFISAIADSYILAETSIDPLDQSTLNIKYNDYQNHIFEPFKQAGCTISQTIVQEPRAGYGYWEYLGSTTESMGTVNGTTTLYHYKRVS : UniRef90_D7RMG2
UniRef90_E5EYU1        : SDAAGFTKYNVLENSILVGNQLPIGSLSIDQSSSGFSEANVQDAIGDLAAAFELPLGSVLVNDTGISPGGIQQSDTIAFTGSVNAPGKNPGETVNVNLYGIFVEAVQGDTSDEFTAKAKIVLDSLAFENKIFTSVE--APIAGQIQVQYIDYKPHTLKQYTSQGITVTQTVDSPPRVGYGSWERLGSQTLTLDGASDPVVLYYFKRV- : UniRef90_E5EYU1
UniRef90_C4MYW7        : SSDAAFISYDPGSKDPIIGDIRPIGGLNVDQSRKGSFINNVQSAIDDLYSISMLNVGDVLVTTNSTPPEAAGQIETLSFTGTVTNKHDPAAKKVVIEVLGYPFVVNVGTSNVALCEMVTTKFTELKDKSILFSKVQRKGTGNDQIEIQYIDSNAHEATVVEKYGISVRGEINSPARYGYGAWSRLGTEEK------FDSTLFYFKRIA : UniRef90_C4MYW7
UniRef90_E3SEX5        : SRHAGYLQFDYTTTDTAVAGNRYIGGPSANQTNDGVFYPTVQSAIDDIAFRAELPVGSIITRHENTAPGFISQSDKIKFTGSIS--GENLGETVLIKVFGFPVEVIVGDSSVLVASKVNDVLLTAISQGMIISATAIDALDQSILNITYNDYQNHIFAPMTQYGCVMEQTIVQQPRAGYGQWEYLGLQDVTLQGGSVPTSLYYYKRV- : UniRef90_E3SEX5
UniRef90_D9I697        : SRNSGFHEFDIGT-DIMIGNNLPIGSLSIDQTIKGVTYPNVQDAIKDLQSLYELPINSVVINTDGIEPGSVSQVDVYKFSGVVSSDIHNLGDPVVLNVFGFPVDVLVGDTSDEVSTKAKVVLDSAAFNNIVFR--NIAAPITSELQVTYIDQKTHILPSYTNMGIKIEQVITSPSRPGYGSWTKIGTADLVLSGQPN-TTVFYFKRVS : UniRef90_D9I697
UniRef90_E5E4E9        : TRDANHHEFTVDQNSIIVANTQPYGAVAIEQVAKGVNYPNVQSAIDDMAALFILPVNTILTTSDGISPAGVSQIDQFKFTGTVRADGKTTGQKTIINFYGFYTEVTIGDTAEEAASKIKFTLEQAAQKGIAIAEVTT-GATLDILQLRYSDFKTHNLKPYSDQGITITPTTATPAKAGYGMWTKIGTETRTLDAATGPVTFYYFRR-- : UniRef90_E5E4E9
UniRef90_D5JFL4        : SKEADYLQYDTYGKLPLIGGKRSIGEPNIDQTKRGVLYGNVQSAIDDLYTLIEQPINGVVTMTEDAPPIAVQQVESVSFDGIVQNID-SDQEQAVVHVYGFPFIFDNGTNAATVCETAYNKFTEFVAAEKYFAEVNRKGVDGTILECRFIDSVPHPATNISENGIRQIGTIDVAAKNGYGSWVKLGSGFLP---DVTPVTVYYFKRIA : UniRef90_D5JFL4
UniRef90_I7LEN1        : SRKADYLEFSPDGAQAIVGNKNPIGLTTTTQTNLGVWYPNIQSAIDDLSSMLTGNIGDVVINTSGINPAGIQQVTQIAFSGTASVQISTAPGTIITSILGFPITVDDGDTSDQIATKLKAEMDTYVLQNKVIDSVTQDGTNPGILNIRHIDYQNHAVEDFNVYGVSAVMTVASPPKVGYGTWFKIGQEAKTFDGGAISYTLNYFQRIA : UniRef90_I7LEN1
UniRef90_E1A1H3        : -RKATHIEYLTKPG-TQVMSARNIGGPTVDSFIDGVNYPNVQSAIDELQTLTMLPINAIYTSDVQVSPEGVRQAEMLTFSGSVLPSELN---KSVITVYGIPFVIAAGTNADAVCDIVLAKFEEMRDAGILFYSVRQSGTTTPIIEVQFIDSAEHNIESFSSWGIVVQREITVPGKPGYGNWEYMGKESKTLTGGSVTSSLYYFKRI- : UniRef90_E1A1H3
UniRef90_Q56EL7        : SRHATHIEYLTKPG-TDVMGARNIGGPTVDSLIAGVDYHNVQSAIDELQTLASFPINGLYISDVKASPEGVRQAELLTFSGVVTDSEE---GKSIIHVYGIPFTVDAGTNADVICNQVLAKFEDMRDNGILFFSVNQSGTTTPVLEVQFLDSATHNIENFVSNGITVAREVSVPGVPGFGTWDYLGEETKTLTGGTDPVRLYYFKRI- : UniRef90_Q56EL7
UniRef90_E1A296        : SRMSRHSEFEMHPSLANTFLSDNIGLATLQDAEDNITHPNVQSAIVDIADGMTMPVGAVIIERKNNDPSGKAQQTILQFDGTIAAP--IGDTNAVLNVFGRRVVIADK----AIAAQVKDQVLTILADFENKGLYVKNVSSLSATSISFRDHKQHVPPTWTQYGVTMTGLVGSPAARGYGQWQKFAETNIT-GTDSTVSKLYYWERIS : UniRef90_E1A296
UniRef90_I6XLZ1        : SRKASDHEFNGDPTLSVVGG---IGNLTIQDARSHNKFKTVENAISDAAYVGRLNKGSVIINIDNTDPSGKPQIDTLTFSGAISSP--ISGMPVVLDVFGTRIEVADGVSPTFVRDKVFDLLKQFEVDGLYVRDVTKLSSDS--INFTYRDLRDHTPEPWSEYGMTVDWVVGSPASYGYGYWEMFFKEDK-VAIDTTVTTLYYWKRI- : UniRef90_I6XLZ1
UniRef90_A0A023W6Q9    : SRNATAIKYVPN-GIPDIGGKRAVGQSNVRNTSEGVFYPNVQAAIDDLYGIATGSIGDGKITWQELPLAGNSQTQRLKFDGEARSD---DGSDVLINVFGFPFVLKTGTKAVDIADIVSKEFTKYKNNSEYFNTVNVIG-DGTTLEIQFTDNIQHDAFMFNQHGVTITGTITDNAHPGYGDWELVGQETK------FGRTLYYYRRKA : UniRef90_A0A023W6Q9
UniRef90_W6AUJ3        : SRNADFLQYEIAPGSIDVMNTQPIGSNTISQKYKGVDFPNVQSAIEDVRGFAILPIGTIVINDTGVSPEGIQQIDDWTFTGTVAVDGKSEGESVLVDVYGFMVPALIGDTDTEFAAKVKLVLEDAITAGDVISS-------------------------------------------------------------------------- : UniRef90_W6AUJ3
UniRef90_E5DRT3        : SRKSTDHEF-IQTRNGYTFGCWNIGNATLQDITKHVDFPTVQNAISDAAYVGRLNVNSIIINTDNTDPGGSPQLDTLVFSGLVSSPNA--GDVAILDIFGRRVTVPDGSSATAVRDATLEMLLDFQTNDLYVRDVVPLGTDT------------------------------------------------------------------ : UniRef90_E5DRT3
UniRef90_R9TF03        : -----------------------LGDSTIDEIQEGAWDPNVQAAIMQLAMAAIMPIGTIIPSTDSTNPFNTNQFETITYSGTSTVDN--------ISLYGVSVQLLVGDSDNDIAEKVFTALH---ASNLFDTDPTDHVPPSNTFVLKHRSSRPHNTAYSNTTGIVITGSSDGQRSLGYGEWELYYT-----DSTTFGDIVYYYRRIA : UniRef90_R9TF03

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201----- :
OrigSeq                : SRLADFLGFRPKTGDIDVMNRQSVGSVTISQLAKGFYEPNIESAINDVHNFSIKDVGTIITNKTGVSPEGVSQTDYWAFSGTVTDDSLPPGSPITVLVFGLPVSATTGMTAIEFVAKVRVALQEAIASFTAINSYKDHPTDGSKLEVTYLDNQKHVLSTYSTYGITISQEIISESKPGYGTWNLLGAQTVTLDNQQTPTVFYHFERTA : OrigSeq

Jnet                   : ---------E------------------HHHHHH------HHHHHHHHHHHHH-----EEEE-----------EEEEEEEEEEE--------EEEEEEEEEEEEEE----HHHHHHHHHHHHHHHHH----------------EEEEEEE-------------EEEEEEEE---------EEEHHH-----------EEEEEEEEE-- : Jnet
jhmm                   : --------EE------------------HHHHHH------HHHHHHHHHHHHH-----EEEE-----------EEEEEEEEEEE--------EEEEEEEEEEEEEE----HHHHHHHHHHHHHHHHH---EEE----------EEEEEEE----------EEEEEEEEEEE---------EEEEE-----E------EEEEEEEEE-- : jhmm
jpssm                  : ----------------------------HHHHHH-------HHHHHHHHHHHH----EEEEEE----------EEEEEEEEEEE--------EEEEEEEEEEEEEEE---HHHHHHHHHHHHHHHHHH---------------EEEEEE--------------EEEEEEEEE-------EHHHHHHH-----------EEEEEEEE-- : jpssm

Lupas 14               : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21               : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : ---B-BB-B------B-BBB---BB-B-B--B---B-B-BBBBBB-BBBBBB-B-BBBBBBB-------B--B---B-B-B-B----------BBB-BBBB-B-B-B------BB--BB-BB--B-----BB--B---B-----BBB-B-B---B----B---BBBBBBBB-B----BBB-B--BB-----B------BBBBBBBB-- : Jnet_25
Jnet_5                 : -----------------BB-----B------B--------B--BB--B--BB------BBB---------------B-B---B----------BBB-B-B--B-B--------B---B---B--B-------------------B-B-B--------------BB-B--------------B------------------B------- : Jnet_5
Jnet_0                 : -------------------------------------------B--------------B------------------------------------------------------B---B---B----------------------B-B----------------B------------------------------------B------- : Jnet_0
Jnet Rel               : 8988777500567776414677777652676652378877145899999987258871688615777777750578888998715777777517899874789996268568999999999999986134101333567887358887416777766665001068898870578887303210101135267777715889988479 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.