SILENT_MODE
BLOCK_FILE jp_IVqxPDA.concise.blc
MAX_NSEQ 759
MAX_INPUT_LEN 761
OUTPUT_FILE jp_IVqxPDA.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 66 748   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 749 66 758 H SPACE
SUB_CHARS 1 749 66 758 E SPACE
SUB_CHARS 1 749 66 758 - SPACE
STRAND 13 752 16
COLOUR_TEXT_REGION 13 752 16 752 51
STRAND 24 752 30
COLOUR_TEXT_REGION 24 752 30 752 51
STRAND 35 752 38
COLOUR_TEXT_REGION 35 752 38 752 51
STRAND 42 752 46
COLOUR_TEXT_REGION 42 752 46 752 51
STRAND 58 752 60
COLOUR_TEXT_REGION 58 752 60 752 51
STRAND 13 757 16
COLOUR_TEXT_REGION 13 757 16 757 51
STRAND 24 757 30
COLOUR_TEXT_REGION 24 757 30 757 51
STRAND 35 757 38
COLOUR_TEXT_REGION 35 757 38 757 51
STRAND 42 757 46
COLOUR_TEXT_REGION 42 757 46 757 51
STRAND 57 757 60
COLOUR_TEXT_REGION 57 757 60 757 51
STRAND 12 758 16
COLOUR_TEXT_REGION 12 758 16 758 51
STRAND 21 758 30
COLOUR_TEXT_REGION 21 758 30 758 51
STRAND 35 758 38
COLOUR_TEXT_REGION 35 758 38 758 51
STRAND 42 758 45
COLOUR_TEXT_REGION 42 758 45 758 51
STRAND 50 758 51
COLOUR_TEXT_REGION 50 758 51 758 51
STRAND 59 758 63
COLOUR_TEXT_REGION 59 758 63 758 51