SILENT_MODE
BLOCK_FILE jp_hfH_5mn.concise.blc
MAX_NSEQ 152
MAX_INPUT_LEN 154
OUTPUT_FILE jp_hfH_5mn.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 110 141   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 142 110 151 H SPACE
SUB_CHARS 1 142 110 151 E SPACE
SUB_CHARS 1 142 110 151 - SPACE
STRAND 3 145 6
COLOUR_TEXT_REGION 3 145 6 145 51
STRAND 12 145 17
COLOUR_TEXT_REGION 12 145 17 145 51
STRAND 41 145 45
COLOUR_TEXT_REGION 41 145 45 145 51
STRAND 60 145 64
COLOUR_TEXT_REGION 60 145 64 145 51
STRAND 75 145 78
COLOUR_TEXT_REGION 75 145 78 145 51
HELIX 26 145 34
COLOUR_TEXT_REGION 26 145 34 145 50
HELIX 47 145 51
COLOUR_TEXT_REGION 47 145 51 145 50
HELIX 82 145 85
COLOUR_TEXT_REGION 82 145 85 145 50
HELIX 89 145 102
COLOUR_TEXT_REGION 89 145 102 145 50
STRAND 3 150 7
COLOUR_TEXT_REGION 3 150 7 150 51
STRAND 12 150 17
COLOUR_TEXT_REGION 12 150 17 150 51
STRAND 41 150 45
COLOUR_TEXT_REGION 41 150 45 150 51
STRAND 60 150 64
COLOUR_TEXT_REGION 60 150 64 150 51
STRAND 75 150 78
COLOUR_TEXT_REGION 75 150 78 150 51
HELIX 26 150 34
COLOUR_TEXT_REGION 26 150 34 150 50
HELIX 47 150 50
COLOUR_TEXT_REGION 47 150 50 150 50
HELIX 82 150 85
COLOUR_TEXT_REGION 82 150 85 150 50
HELIX 89 150 102
COLOUR_TEXT_REGION 89 150 102 150 50
STRAND 4 151 5
COLOUR_TEXT_REGION 4 151 5 151 51
STRAND 11 151 17
COLOUR_TEXT_REGION 11 151 17 151 51
STRAND 41 151 44
COLOUR_TEXT_REGION 41 151 44 151 51
STRAND 61 151 64
COLOUR_TEXT_REGION 61 151 64 151 51
STRAND 76 151 78
COLOUR_TEXT_REGION 76 151 78 151 51
HELIX 26 151 35
COLOUR_TEXT_REGION 26 151 35 151 50
HELIX 47 151 51
COLOUR_TEXT_REGION 47 151 51 151 50
HELIX 82 151 85
COLOUR_TEXT_REGION 82 151 85 151 50
HELIX 89 151 102
COLOUR_TEXT_REGION 89 151 102 151 50