SILENT_MODE
BLOCK_FILE jp_r0NKyMh.concise.blc
MAX_NSEQ 857
MAX_INPUT_LEN 859
OUTPUT_FILE jp_r0NKyMh.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 155 846   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 847 155 856 H SPACE
SUB_CHARS 1 847 155 856 E SPACE
SUB_CHARS 1 847 155 856 - SPACE
STRAND 12 850 15
COLOUR_TEXT_REGION 12 850 15 850 51
STRAND 43 850 46
COLOUR_TEXT_REGION 43 850 46 850 51
STRAND 61 850 66
COLOUR_TEXT_REGION 61 850 66 850 51
STRAND 70 850 76
COLOUR_TEXT_REGION 70 850 76 850 51
STRAND 85 850 95
COLOUR_TEXT_REGION 85 850 95 850 51
STRAND 132 850 138
COLOUR_TEXT_REGION 132 850 138 850 51
HELIX 33 850 37
COLOUR_TEXT_REGION 33 850 37 850 50
HELIX 49 850 53
COLOUR_TEXT_REGION 49 850 53 850 50
STRAND 12 855 15
COLOUR_TEXT_REGION 12 855 15 855 51
STRAND 43 855 46
COLOUR_TEXT_REGION 43 855 46 855 51
STRAND 61 855 66
COLOUR_TEXT_REGION 61 855 66 855 51
STRAND 70 855 77
COLOUR_TEXT_REGION 70 855 77 855 51
STRAND 85 855 90
COLOUR_TEXT_REGION 85 855 90 855 51
STRAND 133 855 138
COLOUR_TEXT_REGION 133 855 138 855 51
HELIX 33 855 36
COLOUR_TEXT_REGION 33 855 36 855 50
HELIX 48 855 53
COLOUR_TEXT_REGION 48 855 53 855 50
STRAND 12 856 15
COLOUR_TEXT_REGION 12 856 15 856 51
STRAND 43 856 46
COLOUR_TEXT_REGION 43 856 46 856 51
STRAND 61 856 66
COLOUR_TEXT_REGION 61 856 66 856 51
STRAND 71 856 75
COLOUR_TEXT_REGION 71 856 75 856 51
STRAND 85 856 96
COLOUR_TEXT_REGION 85 856 96 856 51
STRAND 130 856 138
COLOUR_TEXT_REGION 130 856 138 856 51
HELIX 32 856 37
COLOUR_TEXT_REGION 32 856 37 856 50
HELIX 50 856 53
COLOUR_TEXT_REGION 50 856 53 856 50