SILENT_MODE
BLOCK_FILE jp_QsUnbPs.concise.blc
MAX_NSEQ 873
MAX_INPUT_LEN 875
OUTPUT_FILE jp_QsUnbPs.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 136 862   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 863 136 872 H SPACE
SUB_CHARS 1 863 136 872 E SPACE
SUB_CHARS 1 863 136 872 - SPACE
STRAND 7 866 12
COLOUR_TEXT_REGION 7 866 12 866 51
STRAND 23 866 23
COLOUR_TEXT_REGION 23 866 23 866 51
STRAND 32 866 35
COLOUR_TEXT_REGION 32 866 35 866 51
STRAND 41 866 43
COLOUR_TEXT_REGION 41 866 43 866 51
STRAND 48 866 52
COLOUR_TEXT_REGION 48 866 52 866 51
STRAND 55 866 58
COLOUR_TEXT_REGION 55 866 58 866 51
STRAND 64 866 69
COLOUR_TEXT_REGION 64 866 69 866 51
STRAND 79 866 82
COLOUR_TEXT_REGION 79 866 82 866 51
STRAND 88 866 88
COLOUR_TEXT_REGION 88 866 88 866 51
STRAND 96 866 103
COLOUR_TEXT_REGION 96 866 103 866 51
STRAND 108 866 112
COLOUR_TEXT_REGION 108 866 112 866 51
STRAND 117 866 124
COLOUR_TEXT_REGION 117 866 124 866 51
STRAND 129 866 133
COLOUR_TEXT_REGION 129 866 133 866 51
STRAND 7 871 13
COLOUR_TEXT_REGION 7 871 13 871 51
STRAND 22 871 23
COLOUR_TEXT_REGION 22 871 23 871 51
STRAND 32 871 35
COLOUR_TEXT_REGION 32 871 35 871 51
STRAND 41 871 43
COLOUR_TEXT_REGION 41 871 43 871 51
STRAND 48 871 58
COLOUR_TEXT_REGION 48 871 58 871 51
STRAND 64 871 69
COLOUR_TEXT_REGION 64 871 69 871 51
STRAND 80 871 82
COLOUR_TEXT_REGION 80 871 82 871 51
STRAND 87 871 89
COLOUR_TEXT_REGION 87 871 89 871 51
STRAND 96 871 103
COLOUR_TEXT_REGION 96 871 103 871 51
STRAND 109 871 112
COLOUR_TEXT_REGION 109 871 112 871 51
STRAND 117 871 124
COLOUR_TEXT_REGION 117 871 124 871 51
STRAND 130 871 133
COLOUR_TEXT_REGION 130 871 133 871 51
STRAND 7 872 12
COLOUR_TEXT_REGION 7 872 12 872 51
STRAND 23 872 23
COLOUR_TEXT_REGION 23 872 23 872 51
STRAND 34 872 34
COLOUR_TEXT_REGION 34 872 34 872 51
STRAND 41 872 43
COLOUR_TEXT_REGION 41 872 43 872 51
STRAND 48 872 52
COLOUR_TEXT_REGION 48 872 52 872 51
STRAND 56 872 57
COLOUR_TEXT_REGION 56 872 57 872 51
STRAND 78 872 82
COLOUR_TEXT_REGION 78 872 82 872 51
STRAND 96 872 103
COLOUR_TEXT_REGION 96 872 103 872 51
STRAND 108 872 112
COLOUR_TEXT_REGION 108 872 112 872 51
STRAND 116 872 124
COLOUR_TEXT_REGION 116 872 124 872 51
STRAND 128 872 133
COLOUR_TEXT_REGION 128 872 133 872 51
HELIX 58 872 58
COLOUR_TEXT_REGION 58 872 58 872 50
HELIX 63 872 69
COLOUR_TEXT_REGION 63 872 69 872 50