SILENT_MODE BLOCK_FILE jp_xsszU1M.concise.blc MAX_NSEQ 579 MAX_INPUT_LEN 581 OUTPUT_FILE jp_xsszU1M.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 217 568 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 569 217 578 H SPACE SUB_CHARS 1 569 217 578 E SPACE SUB_CHARS 1 569 217 578 - SPACE STRAND 5 572 9 COLOUR_TEXT_REGION 5 572 9 572 51 STRAND 49 572 62 COLOUR_TEXT_REGION 49 572 62 572 51 STRAND 66 572 70 COLOUR_TEXT_REGION 66 572 70 572 51 STRAND 75 572 81 COLOUR_TEXT_REGION 75 572 81 572 51 STRAND 85 572 121 COLOUR_TEXT_REGION 85 572 121 572 51 STRAND 127 572 132 COLOUR_TEXT_REGION 127 572 132 572 51 STRAND 136 572 146 COLOUR_TEXT_REGION 136 572 146 572 51 STRAND 196 572 198 COLOUR_TEXT_REGION 196 572 198 572 51 STRAND 203 572 209 COLOUR_TEXT_REGION 203 572 209 572 51 HELIX 11 572 29 COLOUR_TEXT_REGION 11 572 29 572 50 HELIX 152 572 172 COLOUR_TEXT_REGION 152 572 172 572 50 HELIX 175 572 191 COLOUR_TEXT_REGION 175 572 191 572 50 STRAND 5 577 9 COLOUR_TEXT_REGION 5 577 9 577 51 STRAND 49 577 54 COLOUR_TEXT_REGION 49 577 54 577 51 STRAND 56 577 62 COLOUR_TEXT_REGION 56 577 62 577 51 STRAND 66 577 70 COLOUR_TEXT_REGION 66 577 70 577 51 STRAND 75 577 81 COLOUR_TEXT_REGION 75 577 81 577 51 STRAND 84 577 122 COLOUR_TEXT_REGION 84 577 122 577 51 STRAND 127 577 133 COLOUR_TEXT_REGION 127 577 133 577 51 STRAND 135 577 146 COLOUR_TEXT_REGION 135 577 146 577 51 STRAND 196 577 197 COLOUR_TEXT_REGION 196 577 197 577 51 STRAND 203 577 209 COLOUR_TEXT_REGION 203 577 209 577 51 HELIX 11 577 28 COLOUR_TEXT_REGION 11 577 28 577 50 HELIX 151 577 170 COLOUR_TEXT_REGION 151 577 170 577 50 HELIX 172 577 173 COLOUR_TEXT_REGION 172 577 173 577 50 HELIX 175 577 192 COLOUR_TEXT_REGION 175 577 192 577 50 STRAND 5 578 9 COLOUR_TEXT_REGION 5 578 9 578 51 STRAND 49 578 62 COLOUR_TEXT_REGION 49 578 62 578 51 STRAND 66 578 70 COLOUR_TEXT_REGION 66 578 70 578 51 STRAND 75 578 81 COLOUR_TEXT_REGION 75 578 81 578 51 STRAND 85 578 95 COLOUR_TEXT_REGION 85 578 95 578 51 STRAND 102 578 109 COLOUR_TEXT_REGION 102 578 109 578 51 STRAND 112 578 120 COLOUR_TEXT_REGION 112 578 120 578 51 STRAND 128 578 132 COLOUR_TEXT_REGION 128 578 132 578 51 STRAND 137 578 146 COLOUR_TEXT_REGION 137 578 146 578 51 STRAND 196 578 198 COLOUR_TEXT_REGION 196 578 198 578 51 STRAND 203 578 209 COLOUR_TEXT_REGION 203 578 209 578 51 HELIX 11 578 29 COLOUR_TEXT_REGION 11 578 29 578 50 HELIX 153 578 161 COLOUR_TEXT_REGION 153 578 161 578 50 HELIX 163 578 171 COLOUR_TEXT_REGION 163 578 171 578 50 HELIX 176 578 191 COLOUR_TEXT_REGION 176 578 191 578 50