SILENT_MODE
BLOCK_FILE jp_FnS5u_7.concise.blc
MAX_NSEQ 832
MAX_INPUT_LEN 834
OUTPUT_FILE jp_FnS5u_7.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 95 821   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 822 95 831 H SPACE
SUB_CHARS 1 822 95 831 E SPACE
SUB_CHARS 1 822 95 831 - SPACE
STRAND 3 825 8
COLOUR_TEXT_REGION 3 825 8 825 51
STRAND 14 825 14
COLOUR_TEXT_REGION 14 825 14 825 51
STRAND 20 825 29
COLOUR_TEXT_REGION 20 825 29 825 51
STRAND 37 825 43
COLOUR_TEXT_REGION 37 825 43 825 51
STRAND 53 825 54
COLOUR_TEXT_REGION 53 825 54 825 51
STRAND 59 825 67
COLOUR_TEXT_REGION 59 825 67 825 51
STRAND 72 825 79
COLOUR_TEXT_REGION 72 825 79 825 51
STRAND 91 825 93
COLOUR_TEXT_REGION 91 825 93 825 51
STRAND 3 830 8
COLOUR_TEXT_REGION 3 830 8 830 51
STRAND 14 830 14
COLOUR_TEXT_REGION 14 830 14 830 51
STRAND 20 830 29
COLOUR_TEXT_REGION 20 830 29 830 51
STRAND 38 830 43
COLOUR_TEXT_REGION 38 830 43 830 51
STRAND 53 830 54
COLOUR_TEXT_REGION 53 830 54 830 51
STRAND 59 830 67
COLOUR_TEXT_REGION 59 830 67 830 51
STRAND 72 830 79
COLOUR_TEXT_REGION 72 830 79 830 51
STRAND 91 830 93
COLOUR_TEXT_REGION 91 830 93 830 51
STRAND 3 831 8
COLOUR_TEXT_REGION 3 831 8 831 51
STRAND 14 831 15
COLOUR_TEXT_REGION 14 831 15 831 51
STRAND 20 831 28
COLOUR_TEXT_REGION 20 831 28 831 51
STRAND 37 831 43
COLOUR_TEXT_REGION 37 831 43 831 51
STRAND 52 831 54
COLOUR_TEXT_REGION 52 831 54 831 51
STRAND 60 831 67
COLOUR_TEXT_REGION 60 831 67 831 51
STRAND 72 831 79
COLOUR_TEXT_REGION 72 831 79 831 51
STRAND 91 831 93
COLOUR_TEXT_REGION 91 831 93 831 51