SILENT_MODE BLOCK_FILE jp_EuiaUqD.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_EuiaUqD.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 155 5 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 6 155 15 H SPACE SUB_CHARS 1 6 155 15 E SPACE SUB_CHARS 1 6 155 15 - SPACE STRAND 25 9 29 COLOUR_TEXT_REGION 25 9 29 9 51 STRAND 37 9 42 COLOUR_TEXT_REGION 37 9 42 9 51 STRAND 49 9 54 COLOUR_TEXT_REGION 49 9 54 9 51 STRAND 61 9 62 COLOUR_TEXT_REGION 61 9 62 9 51 STRAND 68 9 72 COLOUR_TEXT_REGION 68 9 72 9 51 STRAND 76 9 83 COLOUR_TEXT_REGION 76 9 83 9 51 STRAND 88 9 91 COLOUR_TEXT_REGION 88 9 91 9 51 STRAND 97 9 99 COLOUR_TEXT_REGION 97 9 99 9 51 STRAND 106 9 113 COLOUR_TEXT_REGION 106 9 113 9 51 STRAND 129 9 133 COLOUR_TEXT_REGION 129 9 133 9 51 STRAND 135 9 138 COLOUR_TEXT_REGION 135 9 138 9 51 STRAND 141 9 142 COLOUR_TEXT_REGION 141 9 142 9 51 STRAND 147 9 153 COLOUR_TEXT_REGION 147 9 153 9 51 HELIX 7 9 15 COLOUR_TEXT_REGION 7 9 15 9 50 HELIX 134 9 134 COLOUR_TEXT_REGION 134 9 134 9 50 STRAND 25 14 29 COLOUR_TEXT_REGION 25 14 29 14 51 STRAND 37 14 42 COLOUR_TEXT_REGION 37 14 42 14 51 STRAND 49 14 54 COLOUR_TEXT_REGION 49 14 54 14 51 STRAND 61 14 62 COLOUR_TEXT_REGION 61 14 62 14 51 STRAND 68 14 72 COLOUR_TEXT_REGION 68 14 72 14 51 STRAND 76 14 83 COLOUR_TEXT_REGION 76 14 83 14 51 STRAND 89 14 90 COLOUR_TEXT_REGION 89 14 90 14 51 STRAND 97 14 99 COLOUR_TEXT_REGION 97 14 99 14 51 STRAND 107 14 113 COLOUR_TEXT_REGION 107 14 113 14 51 STRAND 118 14 119 COLOUR_TEXT_REGION 118 14 119 14 51 STRAND 129 14 138 COLOUR_TEXT_REGION 129 14 138 14 51 STRAND 141 14 143 COLOUR_TEXT_REGION 141 14 143 14 51 STRAND 147 14 153 COLOUR_TEXT_REGION 147 14 153 14 51 HELIX 8 14 14 COLOUR_TEXT_REGION 8 14 14 14 50 STRAND 25 15 28 COLOUR_TEXT_REGION 25 15 28 15 51 STRAND 37 15 42 COLOUR_TEXT_REGION 37 15 42 15 51 STRAND 48 15 53 COLOUR_TEXT_REGION 48 15 53 15 51 STRAND 60 15 63 COLOUR_TEXT_REGION 60 15 63 15 51 STRAND 68 15 72 COLOUR_TEXT_REGION 68 15 72 15 51 STRAND 75 15 83 COLOUR_TEXT_REGION 75 15 83 15 51 STRAND 88 15 91 COLOUR_TEXT_REGION 88 15 91 15 51 STRAND 97 15 99 COLOUR_TEXT_REGION 97 15 99 15 51 STRAND 106 15 113 COLOUR_TEXT_REGION 106 15 113 15 51 STRAND 147 15 153 COLOUR_TEXT_REGION 147 15 153 15 51 HELIX 7 15 16 COLOUR_TEXT_REGION 7 15 16 15 50 HELIX 23 15 24 COLOUR_TEXT_REGION 23 15 24 15 50 HELIX 130 15 143 COLOUR_TEXT_REGION 130 15 143 15 50