Filename Description -------- ----------- jp_z4cjeTi.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_z4cjeTi.als Alscript command file. Used to generate PS/PDF outputjp_z4cjeTi.blast.gz PSIBLAST output (compressed) jp_z4cjeTi.coils.csv The output from coils in CSV format jp_z4cjeTi.coilseq.lupas_14 The output from coils using a window length of 14 jp_z4cjeTi.coilseq.lupas_21 The output from coils using a window length of 21 jp_z4cjeTi.coilseq.lupas_28 The output from coils using a window length of 28 jp_z4cjeTi.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_z4cjeTi.concise.blc A BLC file of the prediction and alignment jp_z4cjeTi.concise.pdf A PDF file of the prediction and alignment jp_z4cjeTi.fasta Input query sequence in FASTA format jp_z4cjeTi.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_z4cjeTi.hmm The HHMer2 profile of the alignment jp_z4cjeTi.html A HTML file of the prediction and alignment jp_z4cjeTi.input Your raw input jp_z4cjeTi.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_z4cjeTi.jnet The output from Jnet jp_z4cjeTi.profile PSIBLAST profile jp_z4cjeTi.pssm PSIBLAST PSSM in a format for Jnet jp_z4cjeTi.seq Your sequence jp_z4cjeTi.simple.html The brief HTML output of the query sequence and prediction only jp_z4cjeTi.svg.html A Jalview generated SVG file with summary of the results.