SILENT_MODE BLOCK_FILE jp_z4cjeTi.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_z4cjeTi.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 178 10 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 11 178 20 H SPACE SUB_CHARS 1 11 178 20 E SPACE SUB_CHARS 1 11 178 20 - SPACE STRAND 73 14 73 COLOUR_TEXT_REGION 73 14 73 14 51 HELIX 37 14 40 COLOUR_TEXT_REGION 37 14 40 14 50 HELIX 42 14 55 COLOUR_TEXT_REGION 42 14 55 14 50 HELIX 78 14 89 COLOUR_TEXT_REGION 78 14 89 14 50 HELIX 97 14 116 COLOUR_TEXT_REGION 97 14 116 14 50 HELIX 126 14 170 COLOUR_TEXT_REGION 126 14 170 14 50 STRAND 127 19 129 COLOUR_TEXT_REGION 127 19 129 19 51 HELIX 43 19 55 COLOUR_TEXT_REGION 43 19 55 19 50 HELIX 78 19 90 COLOUR_TEXT_REGION 78 19 90 19 50 HELIX 97 19 107 COLOUR_TEXT_REGION 97 19 107 19 50 HELIX 110 19 116 COLOUR_TEXT_REGION 110 19 116 19 50 HELIX 133 19 144 COLOUR_TEXT_REGION 133 19 144 19 50 HELIX 146 19 170 COLOUR_TEXT_REGION 146 19 170 19 50 STRAND 6 20 10 COLOUR_TEXT_REGION 6 20 10 20 51 STRAND 72 20 75 COLOUR_TEXT_REGION 72 20 75 20 51 HELIX 20 20 22 COLOUR_TEXT_REGION 20 20 22 20 50 HELIX 36 20 54 COLOUR_TEXT_REGION 36 20 54 20 50 HELIX 78 20 88 COLOUR_TEXT_REGION 78 20 88 20 50 HELIX 96 20 117 COLOUR_TEXT_REGION 96 20 117 20 50 HELIX 126 20 152 COLOUR_TEXT_REGION 126 20 152 20 50 HELIX 154 20 170 COLOUR_TEXT_REGION 154 20 170 20 50