QUERY               : CINLDWDVIRDKTKTKIESLKEHGPIKNKMSESPNKTVSEEKAKQYLEEFHQTALEHPELSELKTVTGTNPVFAGANYAAWAVNVAQVIDSETADNLEKTTAALSILPGIGSVMGIADGAVHHNTEEIVAQSIALSSLMVAQAIPLVGELIGFAAYNFVESIINLFQVVHNSYNRPAY : QUERY 
UniRef90_A0A014QTL6 : CKRADIDCIR------VPSEKENLPTAEKPAEPANEAIARQRSKESFDDFYKSVVKHDQLPEFNTVSRTERILAVAGLALYGKAVADVFSSDTSSVLDKAAVVTSILPGVGCAVQLADSVEHGNVD---------------------------------------------------- : UniRef90_A0A014QTL6
UniRef90_J5JQT1     : CQRAGFDCVHVSTDESRPTGEEKPVKAEPVDEGELIAVARQRSKESFDNLYKSVVKHDQLPEFNPVSRTERILAVAGIALYGKAVADVFSGD-ASVLDKAAVVTSILPGIGCAVQLADSIEHGHVD---------------------------------------------------- : UniRef90_J5JQT1
UniRef90_E9EXN3     : CKRAGEPCVNPN-----PKEKENNPAVEKPEDGELIAVAKEKSKESFDEFYGSVVKQDKLPEF-SAPRVERILAIGGLVLYGKAVADVFSSEDASVLDKAAVVTSILPGIGCAVQLADDEQRGQVD---------------------------------------------------- : UniRef90_E9EXN3
UniRef90_E9DRF6     : ------------------------------------AMANQRSKESFDEFYGSVVKQGQLPEFST-PRPEKILAVAGLALYGKAVADVFSSD-ASVLDKAAVVTSILPGIGCAVQLADDAERGHGHVDVAQT---------------------------------------------- : UniRef90_E9DRF6
UniRef90_E9F7U4     : CERSALDCMSRPAKEKTPNTADEGELV-----PMAKQSSKENFDSLLEEFHDGLVKNDRLGELSTLPRAERILGVAGLALYGKAVADVFTSDTS-VMDKAVVLTSVLPGIGCAVQLAQGIQN---DHVNAGHIALCFAEDALMLSGFWEIA--LVLQLSESLVEFFK----------- : UniRef90_E9F7U4
UniRef90_D9UZ42     : --------------------------KQFMAEIP-RPVQKPGSKELVKENAKAALDKVQGRLKNQFNLTEGPLNKAFLALWAYDMYEAKTHENVDGLEIAARVTALVPGLGDALGLADGINRGDAE---------------------------------------------------- : UniRef90_D9UZ42

                    : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171----- :
OrigSeq             : CINLDWDVIRDKTKTKIESLKEHGPIKNKMSESPNKTVSEEKAKQYLEEFHQTALEHPELSELKTVTGTNPVFAGANYAAWAVNVAQVIDSETADNLEKTTAALSILPGIGSVMGIADGAVHHNTEEIVAQSIALSSLMVAQAIPLVGELIGFAAYNFVESIINLFQVVHNSYNRPAY : OrigSeq

Jnet                : ------------------------------------HHHH-HHHHHHHHHHHHHH-----------------E----HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------- : Jnet
jhmm                : ------------------------------------------HHHHHHHHHHHHH----------------------HHHHHHHHHHHHH------HHHHHHHHHHH--HHHHHHH----------EEE---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-------- : jhmm
jpssm               : -----EEEEE---------HHH-------------HHHHHHHHHHHHHHHHHHH-----------------EEEE--HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-------- : jpssm

Lupas 14            : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21            : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28            : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25             : ---B-B-BB---B---B------------B-------B----B--BB--BB--BB----B--B--B--B--BBBBBBBBBBBBBBB-BB----B--B--BBBBBBBBBB-BBBBBBB--B----B--BBBBBBBBBBBBBB-BBBBBBBBBBB-BB-BB-BBB-BB-BBB-------- : Jnet_25
Jnet_5              : --------B-------------------------------------B--B---B-----------------BB--B-BBB-B--B-----------B-----BB------B-BB-BB---------------B-B--B--------B--B--------B---B-BB--B--------- : Jnet_5
Jnet_0              : ---------------------------------------------------------------------------B--------------------------B--------------------------------------------------------------------------- : Jnet_0
Jnet Rel            : 9998531123578777531333256777777766411311039999999999852677777664356777520130445664888874237877413489999998711999886221310356401111008988589999994999986036899999999999986337888899 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.