SILENT_MODE BLOCK_FILE jp_nCxzjFf.concise.blc MAX_NSEQ 420 MAX_INPUT_LEN 422 OUTPUT_FILE jp_nCxzjFf.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 151 409 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 410 151 419 H SPACE SUB_CHARS 1 410 151 419 E SPACE SUB_CHARS 1 410 151 419 - SPACE HELIX 5 413 14 COLOUR_TEXT_REGION 5 413 14 413 50 HELIX 22 413 49 COLOUR_TEXT_REGION 22 413 49 413 50 HELIX 57 413 67 COLOUR_TEXT_REGION 57 413 67 413 50 HELIX 76 413 91 COLOUR_TEXT_REGION 76 413 91 413 50 HELIX 96 413 97 COLOUR_TEXT_REGION 96 413 97 413 50 HELIX 99 413 127 COLOUR_TEXT_REGION 99 413 127 413 50 HELIX 134 413 144 COLOUR_TEXT_REGION 134 413 144 413 50 STRAND 19 418 20 COLOUR_TEXT_REGION 19 418 20 418 51 HELIX 5 418 13 COLOUR_TEXT_REGION 5 418 13 418 50 HELIX 22 418 49 COLOUR_TEXT_REGION 22 418 49 418 50 HELIX 57 418 67 COLOUR_TEXT_REGION 57 418 67 418 50 HELIX 75 418 90 COLOUR_TEXT_REGION 75 418 90 418 50 HELIX 101 418 127 COLOUR_TEXT_REGION 101 418 127 418 50 HELIX 134 418 143 COLOUR_TEXT_REGION 134 418 143 418 50 HELIX 6 419 14 COLOUR_TEXT_REGION 6 419 14 419 50 HELIX 22 419 50 COLOUR_TEXT_REGION 22 419 50 419 50 HELIX 57 419 67 COLOUR_TEXT_REGION 57 419 67 419 50 HELIX 79 419 91 COLOUR_TEXT_REGION 79 419 91 419 50 HELIX 94 419 127 COLOUR_TEXT_REGION 94 419 127 419 50 HELIX 134 419 147 COLOUR_TEXT_REGION 134 419 147 419 50