SILENT_MODE BLOCK_FILE jp_EXaMNai.concise.blc MAX_NSEQ 220 MAX_INPUT_LEN 222 OUTPUT_FILE jp_EXaMNai.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 162 209 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 210 162 219 H SPACE SUB_CHARS 1 210 162 219 E SPACE SUB_CHARS 1 210 162 219 - SPACE HELIX 5 213 41 COLOUR_TEXT_REGION 5 213 41 213 50 HELIX 56 213 75 COLOUR_TEXT_REGION 56 213 75 213 50 HELIX 81 213 101 COLOUR_TEXT_REGION 81 213 101 213 50 HELIX 113 213 121 COLOUR_TEXT_REGION 113 213 121 213 50 HELIX 130 213 159 COLOUR_TEXT_REGION 130 213 159 213 50 HELIX 5 218 17 COLOUR_TEXT_REGION 5 218 17 218 50 HELIX 21 218 28 COLOUR_TEXT_REGION 21 218 28 218 50 HELIX 33 218 40 COLOUR_TEXT_REGION 33 218 40 218 50 HELIX 56 218 75 COLOUR_TEXT_REGION 56 218 75 218 50 HELIX 81 218 101 COLOUR_TEXT_REGION 81 218 101 218 50 HELIX 104 218 105 COLOUR_TEXT_REGION 104 218 105 218 50 HELIX 113 218 121 COLOUR_TEXT_REGION 113 218 121 218 50 HELIX 130 218 160 COLOUR_TEXT_REGION 130 218 160 218 50 STRAND 119 219 122 COLOUR_TEXT_REGION 119 219 122 219 51 HELIX 5 219 41 COLOUR_TEXT_REGION 5 219 41 219 50 HELIX 57 219 75 COLOUR_TEXT_REGION 57 219 75 219 50 HELIX 80 219 91 COLOUR_TEXT_REGION 80 219 91 219 50 HELIX 93 219 101 COLOUR_TEXT_REGION 93 219 101 219 50 HELIX 116 219 118 COLOUR_TEXT_REGION 116 219 118 219 50 HELIX 131 219 158 COLOUR_TEXT_REGION 131 219 158 219 50