SILENT_MODE
BLOCK_FILE jp_D3PE3WZ.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_D3PE3WZ.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 158 32   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 33 158 42 H SPACE
SUB_CHARS 1 33 158 42 E SPACE
SUB_CHARS 1 33 158 42 - SPACE
STRAND 5 36 14
COLOUR_TEXT_REGION 5 36 14 36 51
STRAND 52 36 58
COLOUR_TEXT_REGION 52 36 58 36 51
STRAND 64 36 70
COLOUR_TEXT_REGION 64 36 70 36 51
STRAND 106 36 110
COLOUR_TEXT_REGION 106 36 110 36 51
HELIX 32 36 45
COLOUR_TEXT_REGION 32 36 45 36 50
HELIX 74 36 100
COLOUR_TEXT_REGION 74 36 100 36 50
HELIX 111 36 134
COLOUR_TEXT_REGION 111 36 134 36 50
HELIX 142 36 155
COLOUR_TEXT_REGION 142 36 155 36 50
STRAND 5 41 8
COLOUR_TEXT_REGION 5 41 8 41 51
STRAND 10 41 15
COLOUR_TEXT_REGION 10 41 15 41 51
STRAND 52 41 58
COLOUR_TEXT_REGION 52 41 58 41 51
STRAND 64 41 70
COLOUR_TEXT_REGION 64 41 70 41 51
STRAND 107 41 113
COLOUR_TEXT_REGION 107 41 113 41 51
HELIX 9 41 9
COLOUR_TEXT_REGION 9 41 9 41 50
HELIX 32 41 45
COLOUR_TEXT_REGION 32 41 45 41 50
HELIX 73 41 84
COLOUR_TEXT_REGION 73 41 84 41 50
HELIX 86 41 100
COLOUR_TEXT_REGION 86 41 100 41 50
HELIX 115 41 133
COLOUR_TEXT_REGION 115 41 133 41 50
HELIX 142 41 154
COLOUR_TEXT_REGION 142 41 154 41 50
STRAND 5 42 14
COLOUR_TEXT_REGION 5 42 14 42 51
STRAND 32 42 32
COLOUR_TEXT_REGION 32 42 32 42 51
STRAND 52 42 58
COLOUR_TEXT_REGION 52 42 58 42 51
STRAND 64 42 70
COLOUR_TEXT_REGION 64 42 70 42 51
STRAND 105 42 108
COLOUR_TEXT_REGION 105 42 108 42 51
HELIX 33 42 45
COLOUR_TEXT_REGION 33 42 45 42 50
HELIX 75 42 99
COLOUR_TEXT_REGION 75 42 99 42 50
HELIX 109 42 119
COLOUR_TEXT_REGION 109 42 119 42 50
HELIX 123 42 135
COLOUR_TEXT_REGION 123 42 135 42 50
HELIX 142 42 155
COLOUR_TEXT_REGION 142 42 155 42 50