Jpred secondary structure prediction results

QUERY                  : HEEWVGSAYLFVESSLDKVVLSDAYAHPQQKVAVYRALQAALAESGGSPDVLQMLKIHRSDPQLIVQLRFCGRQPCGRFLRAYREGALRAALQRSLAAALAQHSVPLQLELRAGAERLDALLADEERCLSCILAQQPDRLRDEELAELEDALRNLKCG : QUERY 
UniRef90_UPI0003C84E9B : -EEWVGSAYLFVESSLDKVVLSDAYAHPQQKVAVYRALRTALAESGGSPDVLQLLKIHRSDPQLIVQLRFCGRQPCGRFLRAYREGALRAALQGCLAAALALHTVPLQLELRAGTERLDTLLTDEERCLNCIFAQKPDRLPDEELTELEDALRNLTCG : UniRef90_UPI0003C84E9B
UniRef90_UPI0001581DA9 : -EDWVGSAYLFVESMLDKVDLSDAYGHSQKKVAVYQALRTALTESCGNPDELQILKIHRSDPQLIVQVRFCRRQACSLFLRAYREGALRAALQRGLAAALALSSVPLQLELRAGAERLDGLMTEEERCLSCILAEKPDRLRDEELAELDNALRNLSCN : UniRef90_UPI0001581DA9
UniRef90_UPI00033410D6 : REEWVGSAYLFVESSLDKVVLSDAYAHPQKKVAVYNALRTALAESGGSPDQLQMLKIHRSDPQLIVQLRFGGRQPCDRFLRAYREGALRAVLQRCLAAALDLD--RVHLQLRAGAELLDTWLQDEERCFNCIFAQKPDRLRDEELAELDEALRNLQCN : UniRef90_UPI00033410D6
UniRef90_G5C644        : -EEWVGSAYLFLESSVDKVVLSDAYAHPQKKVAVYGALRTALAESSESPDALQILKIHSSDSQLIVQLRFCGRQSCGCFLRAYREGALRATLQRYLAAALDQPSLPLQLELLAGAERLDSWLTNEERCVHSILAQKPDRLRDEELAELEDALSNLTLG : UniRef90_G5C644
UniRef90_H0Z8J2        : ---WTGSAYLFLQSTCKTIALPSLYESSQKKPCVFKALKLALADSTGSVNGVDMLKVHCSHPHLIVQLRFCKEENCRRFLQSYREGALQKSLQSHLQLCLATTMVPLELELKAGSEHLDKMLKDEDRCLECIFREKPDRLPDEEIMELEERLKSLKL- : UniRef90_H0Z8J2
UniRef90_G1KXS9        : HATWMGSAYLFVQSTSENVLLPKLYGNPQRKPNVFKALKLALADSTGSFHGVDMLKVYCSDPQLIVQLKFSVKENCRRFLQSYREGVLRDALQRHLQVSLALSSIPLQTELKAGAEKLDAMIREEERCLECIFGEKPNRLRDEEITELEESLKNL--- : UniRef90_G1KXS9
UniRef90_K7F8S3        : -ELWIGSAYLFLQSTSEKIVLPSLYGSSQQKSSIFKALKLAFADSTGSLDGVDMLKVHCSEPHLIIQLKFCVRENCRKFLRSYRAGLFRESLQNHLRVTLSVTAVSVEVELKTGSEQLDHMLNEEERCLDYIYKEKPDRLRDEEIAELEESFRSLTC- : UniRef90_K7F8S3
UniRef90_UPI0003C2A40D : -EAWIGSAYLFLQS--KKIVLPSLYGNSQQKPKVFQALKLALADSTGSVNGVDVLKVHCSDPHLIVQLKFCKEENCRKFLQSYREGALQKSLQNHLQLTLSMPTISVETDLKTGSEHLDRMLNEVERCLDCIYKEKPDRLRDEEIAELEKSLRSLTC- : UniRef90_UPI0003C2A40D
UniRef90_UPI0004447BAE : -EECVGSAYLFVESLLDKVVLSDVYSQPQQKVAVYSALRTALTENGGSPDTLQILKIHRSDPQLIVQVRFSGRQPCCCFLSAYREGALRSALQKSLAAALTLHSVPLQLELRAGEERLDTLLTDEERCLTCIFAQKPDRLRDEELIELEAALQNLSCG : UniRef90_UPI0004447BAE
UniRef90_I3LPQ9        : -EEWVGSAYLFVESSLDKVVLSESYAHQQHKAAVYRALRTALAESGGSPEELQMLKIHRSDPQLIVQLRFCGRQACSRF-------------QACLEAALALSSVPLQLELRASAERLDALLTDEERCLNFIFAQKPDRLRDEELTELEDALRNLTCG : UniRef90_I3LPQ9
UniRef90_UPI000441D1BA : -DGWVGSAYLFVQATSEKVFLPTLYRNPQQRPCIFKAFKLALADSTGGFNGLDILKVHCSDPHLIVQLKFCKEEDCRKFLQSYHQGGLQDALQRHLKVSLSLASLPLRMELKAGAEKLDSMILEVERCLECISREKPDHLRDEEIAQLEESLMSLNC- : UniRef90_UPI000441D1BA
UniRef90_UPI00038BEF13 : HEEWVGSAYLFLESSLDKVVLSEAYTDPQKKAAIYKALQTAFSESADSPDVLQILKIHCSDPQLVVQLRFSGRLLCGRFLQAYREGALRTALQRCMAPALAQEAVRLELELRAGAEQLDPLLTDEERCLNYILAQKPDRLRDEELAELEDEFRKLTC- : UniRef90_UPI00038BEF13
UniRef90_F7FRX7        : HQEWSGGAYLFVESTMEKVILSDLYQDPQKKLAVFRALKMALAECSGSQDGAQILKIHCSGLQLIVQLKFCGQELCGRFLRSYREGALRDALRNSLVPLLAQHLGQLHLELHVGSERLDLMLHEEDRCLRCIHQAKPDRLRDEEISDLEDAFRSLTC- : UniRef90_F7FRX7
UniRef90_F7BI42        : -EEWVGSAYLFVESSLDKVVLSDAYAHPQQKVAVYRALRTALAESSGSPDVLQMLKIHRSDPQLIVQLRFCGRQACGRYLRAYREGALRAALQGCLEAALTLQSL-LKLELRAAAERL-LLLTDKERCLMI----RPLSLQDQQTFARSVGLKWRKVG : UniRef90_F7BI42
UniRef90_Q1M161        : ---WTGCAVLFLRS-CPAVNLLSLYKDQQGKFSVFKVLKLTLTDSAGGLEGYEILKLHDADPLLGVEVKFVDVAACRRFLQSYGSGAVQQSLSQHTCRLLPQQELALETQLKAGTHTLDFCLDDLELCLQHIHQSQPERLRDDEIAELDQQLQSQALG : UniRef90_Q1M161
UniRef90_H2LY60        : ---WTGCGVLFLQSLCPDVDLLSLYKNQNGKFIVFKVIKLTLSDSAGGLGGYEILKVHDAEPFLGVEVKFVNMAACKQFLDSYSSGALHQSFSQHAGRLFAVQECSVETQLKASTNILDHCLDKLEVCLQHIHQSQPERLRDEEIDQLEQQLQTQALG : UniRef90_H2LY60
UniRef90_T1DKD5        : -DKWVGSAHLFVRAISGADVLPTFYRDPQLKPCVYRALRSAFAESIKDFSGVDILKIHCSDPDLIIQLKFHKEKKCLKFLQSYYRGKLQEALQENLKVFSSLTSLPIKMELKAGAEKLDSFIQEEERCLAYISQQKPDHLRDEEITELEELFMSLS-- : UniRef90_T1DKD5
UniRef90_W5U925        : ---WSGCVVLFLRCCGPEPDLLSFYKDQQEKFSVFKTIKLTLSDVAGGLDGYEILKLHDADPFLGVELKFMDISPCRRFLDSYSCGSLLQFLSQHASRLLSIPGVSVEAMLKAGTYTLDHSLQDQERCLQLIYQSQPVRLRDDEVTQLEQQLQN---- : UniRef90_W5U925
UniRef90_M4AI71        : ---WTGCAVMFLQSLFPGVDLLALYKGEQGKFIIFKVLKLTLRDSAGGLGGYDILKVHDAEPFLGVEVKFVDVAACQQFLESYSSGAVLQSLNQHACRLLGLQDFTVRTQLKAGPQNLDLCLDQLAVCLQHIHLSQPERLRDEEIDHLEQQLQSQALG : UniRef90_M4AI71
UniRef90_H3B6L3        : --DCVGCAFLFLKSTSTQVDLPSHYKDLQTRPKMFGAIKDMLADVVGDSPGYEILKILSSDPQLVVQVKFNEVEKCRQFLRIYKSGTLQQLLQERLRAALLLSELEVQTELKASSSRLDDYLEKEDHCLSCISEEKPDHQKDEDISRLEECLKNLTV- : UniRef90_H3B6L3
UniRef90_W5MMP9        : ---WSGSLFLFLCSCSREEDLTALFRDPEKRFAVFKAVKLTLSDAAGGLEGYEILKLHDAQPSLGIQIKFMDEGVCRKFLQSYASGLVQQFFGQHLSRTLSLKEPTFETQLKAGSETLDNCLPDVDLCLHHVNRAQPDRLQDEEVSELEQQLQSLVLG : UniRef90_W5MMP9
UniRef90_Q4SIH2        : ---WTGCAVLFLRSLSPNVNLLSLYKHQEGKFTVFKVLKLTLIDSARGLRGYEILKVHDADPLLGVEVKFVDVAACQQFLSSYGSGALHQSLSQHACRLLALQELRVETQLKASTHVLDLCLDDLQCCLKHIHLSQPERLCDEEIDHLEQMLQSQAL- : UniRef90_Q4SIH2
UniRef90_V9L4S2        : ---WVGSAFLFIKS--DDVDLSSLFQNEKTQLKVYKALKIALADATGSGGGCEILKVYES--TFGMQLKFTKEDRCLKFMNSYKNKALQQALQSHFEK-LSIPMTTFSTELKAGTMKLDEFLDQEEICIRHIKENMPNHLRDDKISELEEDLKRLVL- : UniRef90_V9L4S2
UniRef90_Q32NG6        : ---WVGSVYLYIKS--DTVPLPGKYTH--QKALIYEALRSAISESTGCRDSIEILKIHSSDQQLILYLKFCGLEPCQRFLKDYKECKVQMQIQNKLKNCFSVEGLPIFTELKIDTGEIDSLLEKEEQCLKYISQMKPTIQKDDELAEIDERLKSIKL- : UniRef90_Q32NG6
UniRef90_F2VR23        : ---------------------------------------LTLIDSAGGLAGYQILKVHDADPFLGVEVKFEDVAACQQFLESYSSGAVRQSLSQHACRLLALQEFTVETQLKAGTHILDLYLDELELCLQHIHLSQPERLRDEEIDHLEEQLQNQALG : UniRef90_F2VR23
UniRef90_UPI0001555370 : --------------------------------------------ATGNQPGLEVLKIHCSEPQLIVQLKFCQQECCRRFLRSYREGALLEALQSHLQLVLGCSPGPLLLELKVGSEQLDGLMQEEERCLELIYGEKPDRLRDEEIADLEDALR----- : UniRef90_UPI0001555370
UniRef90_V8N593        : -------------------------------------------------------------------LKFHKQENCRKFLQSYQQGELQEALQRHLKVSLALPSLPLKTELRAGAEKLDSIIQEEERCLETISREKPNHLRDEEVAELEASLMNLT-- : UniRef90_V8N593
UniRef90_S4RMK5        : -----------------------------------------------------ILKVHST--LFGVDLRFDSTASCSAFLERYVNGDMEVQLNRGLAPK-HQDSFTTSLQVR-GLHS-DQLIHDSPALLSSLLPPQPTALQDDEVKKMQHDLLMLNLN : UniRef90_S4RMK5

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151----- :
OrigSeq                : HEEWVGSAYLFVESSLDKVVLSDAYAHPQQKVAVYRALQAALAESGGSPDVLQMLKIHRSDPQLIVQLRFCGRQPCGRFLRAYREGALRAALQRSLAAALAQHSVPLQLELRAGAERLDALLADEERCLSCILAQQPDRLRDEELAELEDALRNLKCG : OrigSeq

Jnet                   : ----EEEEEEEEEE-----------------HHHHHHHHHHHHHH------EEEEEEE-----EEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHH-----EEEEEHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH--- : Jnet
jhmm                   : ----EEEEHEEEEEE----------------HHHHHHHHHHHHHH------EEEEEEE-----EEEEEEE--HHHHHHHHHHHH-HHHHHHHHHHHHHHH------EEEEEEE-HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---- : jhmm
jpssm                  : ----EEEEEEEEEE-----------------EHHHHHHHHHHHHH------EEEEEEE-----EEEEEEE----HHHHHHHHHHHHHHHHHHHHHHHHH-----EEEEHHHHHHHHHHH---HHHHHHHHHHHHH------HHHHHHHHHHHHHH--- : jpssm

Lupas 14               : ------------------------------------------------------------------------------------------------------------------------------------------------CCCCCCCCCCCCCC : Lupas 14
Lupas 21               : -------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : -------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : ---BBBBBBBBBBBBB--B-B--BB-----BB-BB-BB-BBBB-BB----BBBBBBBB-----BBB-B-B-----B--BB--B--B-BB-BB--BB--BB-B--B-B-B-B-BBB--BB-BB--B-BBB-BB----B--B----B--B---B--B--- : Jnet_25
Jnet_5                 : ---B--BBBBBB-B------B------------BB-BB--BB--B------B-BB-B------B-B-B-------B--BB-------B---B---B----------B---B------B---------BB--B-------------------B------ : Jnet_5
Jnet_0                 : ------BB-BBB-------------------------B--BB---------------------------------B-----------B---B---B-------------------------------B------------------------------ : Jnet_0
Jnet Rel               : 99815632244431277777666556778752368999999988516888458898716887268888854813138999999834899999999998517996316331024399876113789999999983258887478999999999870289 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.