SILENT_MODE
BLOCK_FILE jp_RfmsPRk.concise.blc
MAX_NSEQ 982
MAX_INPUT_LEN 984
OUTPUT_FILE jp_RfmsPRk.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 110 971   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 972 110 981 H SPACE
SUB_CHARS 1 972 110 981 E SPACE
SUB_CHARS 1 972 110 981 - SPACE
HELIX 2 975 16
COLOUR_TEXT_REGION 2 975 16 975 50
HELIX 18 975 39
COLOUR_TEXT_REGION 18 975 39 975 50
HELIX 49 975 61
COLOUR_TEXT_REGION 49 975 61 975 50
HELIX 66 975 83
COLOUR_TEXT_REGION 66 975 83 975 50
HELIX 92 975 105
COLOUR_TEXT_REGION 92 975 105 975 50
HELIX 2 980 16
COLOUR_TEXT_REGION 2 980 16 980 50
HELIX 18 980 39
COLOUR_TEXT_REGION 18 980 39 980 50
HELIX 49 980 61
COLOUR_TEXT_REGION 49 980 61 980 50
HELIX 66 980 83
COLOUR_TEXT_REGION 66 980 83 980 50
HELIX 93 980 101
COLOUR_TEXT_REGION 93 980 101 980 50
HELIX 103 980 104
COLOUR_TEXT_REGION 103 980 104 980 50
HELIX 2 981 16
COLOUR_TEXT_REGION 2 981 16 981 50
HELIX 22 981 39
COLOUR_TEXT_REGION 22 981 39 981 50
HELIX 49 981 61
COLOUR_TEXT_REGION 49 981 61 981 50
HELIX 66 981 83
COLOUR_TEXT_REGION 66 981 83 981 50
HELIX 91 981 107
COLOUR_TEXT_REGION 91 981 107 981 50