SILENT_MODE BLOCK_FILE jp_mZkknJr.concise.blc MAX_NSEQ 388 MAX_INPUT_LEN 390 OUTPUT_FILE jp_mZkknJr.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 139 377 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 378 139 387 H SPACE SUB_CHARS 1 378 139 387 E SPACE SUB_CHARS 1 378 139 387 - SPACE STRAND 4 381 12 COLOUR_TEXT_REGION 4 381 12 381 51 STRAND 40 381 44 COLOUR_TEXT_REGION 40 381 44 381 51 STRAND 52 381 58 COLOUR_TEXT_REGION 52 381 58 381 51 STRAND 76 381 81 COLOUR_TEXT_REGION 76 381 81 381 51 STRAND 110 381 113 COLOUR_TEXT_REGION 110 381 113 381 51 HELIX 20 381 29 COLOUR_TEXT_REGION 20 381 29 381 50 HELIX 89 381 106 COLOUR_TEXT_REGION 89 381 106 381 50 HELIX 121 381 136 COLOUR_TEXT_REGION 121 381 136 381 50 STRAND 4 386 12 COLOUR_TEXT_REGION 4 386 12 386 51 STRAND 40 386 44 COLOUR_TEXT_REGION 40 386 44 386 51 STRAND 52 386 58 COLOUR_TEXT_REGION 52 386 58 386 51 STRAND 74 386 81 COLOUR_TEXT_REGION 74 386 81 386 51 STRAND 110 386 113 COLOUR_TEXT_REGION 110 386 113 386 51 HELIX 20 386 29 COLOUR_TEXT_REGION 20 386 29 386 50 HELIX 89 386 106 COLOUR_TEXT_REGION 89 386 106 386 50 HELIX 121 386 137 COLOUR_TEXT_REGION 121 386 137 386 50 STRAND 5 387 12 COLOUR_TEXT_REGION 5 387 12 387 51 STRAND 40 387 44 COLOUR_TEXT_REGION 40 387 44 387 51 STRAND 52 387 58 COLOUR_TEXT_REGION 52 387 58 387 51 STRAND 76 387 82 COLOUR_TEXT_REGION 76 387 82 387 51 STRAND 110 387 113 COLOUR_TEXT_REGION 110 387 113 387 51 HELIX 20 387 30 COLOUR_TEXT_REGION 20 387 30 387 50 HELIX 89 387 106 COLOUR_TEXT_REGION 89 387 106 387 50 HELIX 121 387 136 COLOUR_TEXT_REGION 121 387 136 387 50