SILENT_MODE
BLOCK_FILE jp_GwPP9_S.concise.blc
MAX_NSEQ 262
MAX_INPUT_LEN 264
OUTPUT_FILE jp_GwPP9_S.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 90 251   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 252 90 261 H SPACE
SUB_CHARS 1 252 90 261 E SPACE
SUB_CHARS 1 252 90 261 - SPACE
STRAND 5 255 12
COLOUR_TEXT_REGION 5 255 12 255 51
STRAND 36 255 37
COLOUR_TEXT_REGION 36 255 37 255 51
STRAND 42 255 43
COLOUR_TEXT_REGION 42 255 43 255 51
STRAND 50 255 59
COLOUR_TEXT_REGION 50 255 59 255 51
STRAND 79 255 87
COLOUR_TEXT_REGION 79 255 87 255 51
HELIX 20 255 29
COLOUR_TEXT_REGION 20 255 29 255 50
HELIX 65 255 73
COLOUR_TEXT_REGION 65 255 73 255 50
STRAND 5 260 12
COLOUR_TEXT_REGION 5 260 12 260 51
STRAND 36 260 37
COLOUR_TEXT_REGION 36 260 37 260 51
STRAND 42 260 43
COLOUR_TEXT_REGION 42 260 43 260 51
STRAND 50 260 59
COLOUR_TEXT_REGION 50 260 59 260 51
STRAND 79 260 88
COLOUR_TEXT_REGION 79 260 88 260 51
HELIX 20 260 29
COLOUR_TEXT_REGION 20 260 29 260 50
HELIX 65 260 73
COLOUR_TEXT_REGION 65 260 73 260 50
STRAND 5 261 12
COLOUR_TEXT_REGION 5 261 12 261 51
STRAND 36 261 37
COLOUR_TEXT_REGION 36 261 37 261 51
STRAND 50 261 59
COLOUR_TEXT_REGION 50 261 59 261 51
STRAND 80 261 83
COLOUR_TEXT_REGION 80 261 83 261 51
HELIX 20 261 28
COLOUR_TEXT_REGION 20 261 28 261 50
HELIX 43 261 43
COLOUR_TEXT_REGION 43 261 43 261 50
HELIX 45 261 49
COLOUR_TEXT_REGION 45 261 49 261 50
HELIX 67 261 72
COLOUR_TEXT_REGION 67 261 72 261 50
HELIX 84 261 86
COLOUR_TEXT_REGION 84 261 86 261 50