SILENT_MODE
BLOCK_FILE jp__pCfA1K.concise.blc
MAX_NSEQ 1147
MAX_INPUT_LEN 1149
OUTPUT_FILE jp__pCfA1K.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 134 1136   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1137 134 1146 H SPACE
SUB_CHARS 1 1137 134 1146 E SPACE
SUB_CHARS 1 1137 134 1146 - SPACE
STRAND 100 1140 104
COLOUR_TEXT_REGION 100 1140 104 1140 51
STRAND 108 1140 113
COLOUR_TEXT_REGION 108 1140 113 1140 51
HELIX 3 1140 11
COLOUR_TEXT_REGION 3 1140 11 1140 50
HELIX 30 1140 45
COLOUR_TEXT_REGION 30 1140 45 1140 50
HELIX 68 1140 77
COLOUR_TEXT_REGION 68 1140 77 1140 50
HELIX 82 1140 92
COLOUR_TEXT_REGION 82 1140 92 1140 50
HELIX 117 1140 129
COLOUR_TEXT_REGION 117 1140 129 1140 50
STRAND 68 1145 70
COLOUR_TEXT_REGION 68 1145 70 1145 51
STRAND 102 1145 104
COLOUR_TEXT_REGION 102 1145 104 1145 51
STRAND 108 1145 113
COLOUR_TEXT_REGION 108 1145 113 1145 51
HELIX 3 1145 11
COLOUR_TEXT_REGION 3 1145 11 1145 50
HELIX 30 1145 45
COLOUR_TEXT_REGION 30 1145 45 1145 50
HELIX 71 1145 77
COLOUR_TEXT_REGION 71 1145 77 1145 50
HELIX 82 1145 92
COLOUR_TEXT_REGION 82 1145 92 1145 50
HELIX 117 1145 128
COLOUR_TEXT_REGION 117 1145 128 1145 50
STRAND 99 1146 104
COLOUR_TEXT_REGION 99 1146 104 1146 51
STRAND 108 1146 113
COLOUR_TEXT_REGION 108 1146 113 1146 51
HELIX 4 1146 11
COLOUR_TEXT_REGION 4 1146 11 1146 50
HELIX 30 1146 45
COLOUR_TEXT_REGION 30 1146 45 1146 50
HELIX 50 1146 56
COLOUR_TEXT_REGION 50 1146 56 1146 50
HELIX 68 1146 77
COLOUR_TEXT_REGION 68 1146 77 1146 50
HELIX 82 1146 92
COLOUR_TEXT_REGION 82 1146 92 1146 50
HELIX 117 1146 130
COLOUR_TEXT_REGION 117 1146 130 1146 50