SILENT_MODE
BLOCK_FILE jp_XPKvJtz.concise.blc
MAX_NSEQ 1119
MAX_INPUT_LEN 1121
OUTPUT_FILE jp_XPKvJtz.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 115 1108   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1109 115 1118 H SPACE
SUB_CHARS 1 1109 115 1118 E SPACE
SUB_CHARS 1 1109 115 1118 - SPACE
STRAND 4 1112 8
COLOUR_TEXT_REGION 4 1112 8 1112 51
STRAND 19 1112 26
COLOUR_TEXT_REGION 19 1112 26 1112 51
STRAND 32 1112 40
COLOUR_TEXT_REGION 32 1112 40 1112 51
STRAND 59 1112 65
COLOUR_TEXT_REGION 59 1112 65 1112 51
STRAND 81 1112 89
COLOUR_TEXT_REGION 81 1112 89 1112 51
STRAND 97 1112 102
COLOUR_TEXT_REGION 97 1112 102 1112 51
STRAND 108 1112 112
COLOUR_TEXT_REGION 108 1112 112 1112 51
HELIX 67 1112 72
COLOUR_TEXT_REGION 67 1112 72 1112 50
STRAND 4 1117 8
COLOUR_TEXT_REGION 4 1117 8 1117 51
STRAND 20 1117 26
COLOUR_TEXT_REGION 20 1117 26 1117 51
STRAND 32 1117 39
COLOUR_TEXT_REGION 32 1117 39 1117 51
STRAND 59 1117 64
COLOUR_TEXT_REGION 59 1117 64 1117 51
STRAND 81 1117 89
COLOUR_TEXT_REGION 81 1117 89 1117 51
STRAND 97 1117 101
COLOUR_TEXT_REGION 97 1117 101 1117 51
STRAND 108 1117 112
COLOUR_TEXT_REGION 108 1117 112 1117 51
HELIX 67 1117 72
COLOUR_TEXT_REGION 67 1117 72 1117 50
STRAND 4 1118 8
COLOUR_TEXT_REGION 4 1118 8 1118 51
STRAND 19 1118 26
COLOUR_TEXT_REGION 19 1118 26 1118 51
STRAND 32 1118 40
COLOUR_TEXT_REGION 32 1118 40 1118 51
STRAND 58 1118 65
COLOUR_TEXT_REGION 58 1118 65 1118 51
STRAND 81 1118 89
COLOUR_TEXT_REGION 81 1118 89 1118 51
STRAND 96 1118 102
COLOUR_TEXT_REGION 96 1118 102 1118 51
STRAND 109 1118 112
COLOUR_TEXT_REGION 109 1118 112 1118 51
HELIX 66 1118 72
COLOUR_TEXT_REGION 66 1118 72 1118 50