SILENT_MODE BLOCK_FILE jp_VC0qyH5.concise.blc MAX_NSEQ 563 MAX_INPUT_LEN 565 OUTPUT_FILE jp_VC0qyH5.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 236 552 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 553 236 562 H SPACE SUB_CHARS 1 553 236 562 E SPACE SUB_CHARS 1 553 236 562 - SPACE HELIX 5 556 18 COLOUR_TEXT_REGION 5 556 18 556 50 HELIX 43 556 66 COLOUR_TEXT_REGION 43 556 66 556 50 HELIX 75 556 84 COLOUR_TEXT_REGION 75 556 84 556 50 HELIX 87 556 98 COLOUR_TEXT_REGION 87 556 98 556 50 HELIX 116 556 118 COLOUR_TEXT_REGION 116 556 118 556 50 HELIX 122 556 139 COLOUR_TEXT_REGION 122 556 139 556 50 HELIX 144 556 155 COLOUR_TEXT_REGION 144 556 155 556 50 HELIX 166 556 186 COLOUR_TEXT_REGION 166 556 186 556 50 HELIX 194 556 219 COLOUR_TEXT_REGION 194 556 219 556 50 HELIX 229 556 234 COLOUR_TEXT_REGION 229 556 234 556 50 HELIX 5 561 18 COLOUR_TEXT_REGION 5 561 18 561 50 HELIX 43 561 65 COLOUR_TEXT_REGION 43 561 65 561 50 HELIX 75 561 84 COLOUR_TEXT_REGION 75 561 84 561 50 HELIX 86 561 97 COLOUR_TEXT_REGION 86 561 97 561 50 HELIX 116 561 118 COLOUR_TEXT_REGION 116 561 118 561 50 HELIX 124 561 139 COLOUR_TEXT_REGION 124 561 139 561 50 HELIX 144 561 156 COLOUR_TEXT_REGION 144 561 156 561 50 HELIX 167 561 186 COLOUR_TEXT_REGION 167 561 186 561 50 HELIX 194 561 219 COLOUR_TEXT_REGION 194 561 219 561 50 HELIX 229 561 234 COLOUR_TEXT_REGION 229 561 234 561 50 STRAND 90 562 91 COLOUR_TEXT_REGION 90 562 91 562 51 HELIX 4 562 18 COLOUR_TEXT_REGION 4 562 18 562 50 HELIX 46 562 67 COLOUR_TEXT_REGION 46 562 67 562 50 HELIX 75 562 84 COLOUR_TEXT_REGION 75 562 84 562 50 HELIX 92 562 99 COLOUR_TEXT_REGION 92 562 99 562 50 HELIX 115 562 137 COLOUR_TEXT_REGION 115 562 137 562 50 HELIX 145 562 154 COLOUR_TEXT_REGION 145 562 154 562 50 HELIX 166 562 186 COLOUR_TEXT_REGION 166 562 186 562 50 HELIX 194 562 219 COLOUR_TEXT_REGION 194 562 219 562 50 HELIX 229 562 235 COLOUR_TEXT_REGION 229 562 235 562 50