SILENT_MODE BLOCK_FILE jp_nUCICef.concise.blc MAX_NSEQ 665 MAX_INPUT_LEN 667 OUTPUT_FILE jp_nUCICef.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 194 654 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 655 194 664 H SPACE SUB_CHARS 1 655 194 664 E SPACE SUB_CHARS 1 655 194 664 - SPACE STRAND 128 658 130 COLOUR_TEXT_REGION 128 658 130 658 51 HELIX 3 658 14 COLOUR_TEXT_REGION 3 658 14 658 50 HELIX 22 658 30 COLOUR_TEXT_REGION 22 658 30 658 50 HELIX 37 658 47 COLOUR_TEXT_REGION 37 658 47 658 50 HELIX 55 658 66 COLOUR_TEXT_REGION 55 658 66 658 50 HELIX 84 658 91 COLOUR_TEXT_REGION 84 658 91 658 50 HELIX 109 658 122 COLOUR_TEXT_REGION 109 658 122 658 50 HELIX 133 658 143 COLOUR_TEXT_REGION 133 658 143 658 50 HELIX 150 658 158 COLOUR_TEXT_REGION 150 658 158 658 50 HELIX 170 658 188 COLOUR_TEXT_REGION 170 658 188 658 50 STRAND 129 663 130 COLOUR_TEXT_REGION 129 663 130 663 51 HELIX 2 663 14 COLOUR_TEXT_REGION 2 663 14 663 50 HELIX 22 663 30 COLOUR_TEXT_REGION 22 663 30 663 50 HELIX 38 663 46 COLOUR_TEXT_REGION 38 663 46 663 50 HELIX 56 663 67 COLOUR_TEXT_REGION 56 663 67 663 50 HELIX 84 663 92 COLOUR_TEXT_REGION 84 663 92 663 50 HELIX 109 663 122 COLOUR_TEXT_REGION 109 663 122 663 50 HELIX 132 663 142 COLOUR_TEXT_REGION 132 663 142 663 50 HELIX 149 663 157 COLOUR_TEXT_REGION 149 663 157 663 50 HELIX 172 663 187 COLOUR_TEXT_REGION 172 663 187 663 50 STRAND 127 664 129 COLOUR_TEXT_REGION 127 664 129 664 51 HELIX 3 664 14 COLOUR_TEXT_REGION 3 664 14 664 50 HELIX 22 664 30 COLOUR_TEXT_REGION 22 664 30 664 50 HELIX 36 664 48 COLOUR_TEXT_REGION 36 664 48 664 50 HELIX 54 664 64 COLOUR_TEXT_REGION 54 664 64 664 50 HELIX 85 664 90 COLOUR_TEXT_REGION 85 664 90 664 50 HELIX 101 664 106 COLOUR_TEXT_REGION 101 664 106 664 50 HELIX 108 664 122 COLOUR_TEXT_REGION 108 664 122 664 50 HELIX 134 664 146 COLOUR_TEXT_REGION 134 664 146 664 50 HELIX 152 664 159 COLOUR_TEXT_REGION 152 664 159 664 50 HELIX 167 664 188 COLOUR_TEXT_REGION 167 664 188 664 50