SILENT_MODE BLOCK_FILE jp_z89cqGF.concise.blc MAX_NSEQ 1216 MAX_INPUT_LEN 1218 OUTPUT_FILE jp_z89cqGF.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 81 1205 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1206 81 1215 H SPACE SUB_CHARS 1 1206 81 1215 E SPACE SUB_CHARS 1 1206 81 1215 - SPACE STRAND 3 1209 6 COLOUR_TEXT_REGION 3 1209 6 1209 51 STRAND 18 1209 22 COLOUR_TEXT_REGION 18 1209 22 1209 51 STRAND 51 1209 55 COLOUR_TEXT_REGION 51 1209 55 1209 51 STRAND 71 1209 75 COLOUR_TEXT_REGION 71 1209 75 1209 51 HELIX 7 1209 14 COLOUR_TEXT_REGION 7 1209 14 1209 50 HELIX 28 1209 37 COLOUR_TEXT_REGION 28 1209 37 1209 50 HELIX 42 1209 45 COLOUR_TEXT_REGION 42 1209 45 1209 50 STRAND 3 1214 6 COLOUR_TEXT_REGION 3 1214 6 1214 51 STRAND 18 1214 22 COLOUR_TEXT_REGION 18 1214 22 1214 51 STRAND 51 1214 55 COLOUR_TEXT_REGION 51 1214 55 1214 51 STRAND 71 1214 75 COLOUR_TEXT_REGION 71 1214 75 1214 51 HELIX 7 1214 14 COLOUR_TEXT_REGION 7 1214 14 1214 50 HELIX 28 1214 37 COLOUR_TEXT_REGION 28 1214 37 1214 50 HELIX 42 1214 46 COLOUR_TEXT_REGION 42 1214 46 1214 50 STRAND 4 1215 4 COLOUR_TEXT_REGION 4 1215 4 1215 51 STRAND 19 1215 21 COLOUR_TEXT_REGION 19 1215 21 1215 51 STRAND 51 1215 55 COLOUR_TEXT_REGION 51 1215 55 1215 51 STRAND 71 1215 75 COLOUR_TEXT_REGION 71 1215 75 1215 51 HELIX 5 1215 14 COLOUR_TEXT_REGION 5 1215 14 1215 50 HELIX 28 1215 37 COLOUR_TEXT_REGION 28 1215 37 1215 50