SILENT_MODE BLOCK_FILE jp_vwNDEHK.concise.blc MAX_NSEQ 983 MAX_INPUT_LEN 985 OUTPUT_FILE jp_vwNDEHK.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 142 972 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 973 142 982 H SPACE SUB_CHARS 1 973 142 982 E SPACE SUB_CHARS 1 973 142 982 - SPACE STRAND 4 976 8 COLOUR_TEXT_REGION 4 976 8 976 51 STRAND 29 976 44 COLOUR_TEXT_REGION 29 976 44 976 51 STRAND 70 976 77 COLOUR_TEXT_REGION 70 976 77 976 51 STRAND 79 976 79 COLOUR_TEXT_REGION 79 976 79 976 51 STRAND 86 976 92 COLOUR_TEXT_REGION 86 976 92 976 51 STRAND 117 976 121 COLOUR_TEXT_REGION 117 976 121 976 51 STRAND 126 976 129 COLOUR_TEXT_REGION 126 976 129 976 51 HELIX 14 976 22 COLOUR_TEXT_REGION 14 976 22 976 50 HELIX 48 976 65 COLOUR_TEXT_REGION 48 976 65 976 50 HELIX 96 976 113 COLOUR_TEXT_REGION 96 976 113 976 50 HELIX 135 976 140 COLOUR_TEXT_REGION 135 976 140 976 50 STRAND 3 981 8 COLOUR_TEXT_REGION 3 981 8 981 51 STRAND 29 981 44 COLOUR_TEXT_REGION 29 981 44 981 51 STRAND 70 981 79 COLOUR_TEXT_REGION 70 981 79 981 51 STRAND 85 981 92 COLOUR_TEXT_REGION 85 981 92 981 51 STRAND 116 981 122 COLOUR_TEXT_REGION 116 981 122 981 51 STRAND 126 981 129 COLOUR_TEXT_REGION 126 981 129 981 51 HELIX 14 981 22 COLOUR_TEXT_REGION 14 981 22 981 50 HELIX 48 981 64 COLOUR_TEXT_REGION 48 981 64 981 50 HELIX 96 981 113 COLOUR_TEXT_REGION 96 981 113 981 50 HELIX 136 981 140 COLOUR_TEXT_REGION 136 981 140 981 50 STRAND 4 982 8 COLOUR_TEXT_REGION 4 982 8 982 51 STRAND 29 982 45 COLOUR_TEXT_REGION 29 982 45 982 51 STRAND 69 982 76 COLOUR_TEXT_REGION 69 982 76 982 51 STRAND 80 982 80 COLOUR_TEXT_REGION 80 982 80 982 51 STRAND 88 982 93 COLOUR_TEXT_REGION 88 982 93 982 51 STRAND 118 982 121 COLOUR_TEXT_REGION 118 982 121 982 51 STRAND 127 982 129 COLOUR_TEXT_REGION 127 982 129 982 51 HELIX 14 982 23 COLOUR_TEXT_REGION 14 982 23 982 50 HELIX 49 982 65 COLOUR_TEXT_REGION 49 982 65 982 50 HELIX 86 982 87 COLOUR_TEXT_REGION 86 982 87 982 50 HELIX 96 982 113 COLOUR_TEXT_REGION 96 982 113 982 50 HELIX 133 982 140 COLOUR_TEXT_REGION 133 982 140 982 50