SILENT_MODE BLOCK_FILE jp_FJHl2xX.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_FJHl2xX.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 365 15 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 16 365 25 H SPACE SUB_CHARS 1 16 365 25 E SPACE SUB_CHARS 1 16 365 25 - SPACE STRAND 42 19 45 COLOUR_TEXT_REGION 42 19 45 19 51 STRAND 48 19 52 COLOUR_TEXT_REGION 48 19 52 19 51 STRAND 57 19 59 COLOUR_TEXT_REGION 57 19 59 19 51 STRAND 143 19 144 COLOUR_TEXT_REGION 143 19 144 19 51 STRAND 195 19 197 COLOUR_TEXT_REGION 195 19 197 19 51 STRAND 207 19 211 COLOUR_TEXT_REGION 207 19 211 19 51 STRAND 220 19 224 COLOUR_TEXT_REGION 220 19 224 19 51 STRAND 237 19 239 COLOUR_TEXT_REGION 237 19 239 19 51 STRAND 250 19 251 COLOUR_TEXT_REGION 250 19 251 19 51 STRAND 258 19 262 COLOUR_TEXT_REGION 258 19 262 19 51 STRAND 270 19 272 COLOUR_TEXT_REGION 270 19 272 19 51 STRAND 284 19 286 COLOUR_TEXT_REGION 284 19 286 19 51 STRAND 312 19 315 COLOUR_TEXT_REGION 312 19 315 19 51 STRAND 356 19 358 COLOUR_TEXT_REGION 356 19 358 19 51 HELIX 9 19 19 COLOUR_TEXT_REGION 9 19 19 19 50 HELIX 85 19 112 COLOUR_TEXT_REGION 85 19 112 19 50 HELIX 162 19 175 COLOUR_TEXT_REGION 162 19 175 19 50 HELIX 235 19 236 COLOUR_TEXT_REGION 235 19 236 19 50 HELIX 290 19 305 COLOUR_TEXT_REGION 290 19 305 19 50 HELIX 322 19 328 COLOUR_TEXT_REGION 322 19 328 19 50 STRAND 42 24 45 COLOUR_TEXT_REGION 42 24 45 24 51 STRAND 48 24 51 COLOUR_TEXT_REGION 48 24 51 24 51 STRAND 57 24 58 COLOUR_TEXT_REGION 57 24 58 24 51 STRAND 143 24 144 COLOUR_TEXT_REGION 143 24 144 24 51 STRAND 195 24 197 COLOUR_TEXT_REGION 195 24 197 24 51 STRAND 209 24 211 COLOUR_TEXT_REGION 209 24 211 24 51 STRAND 221 24 223 COLOUR_TEXT_REGION 221 24 223 24 51 STRAND 236 24 241 COLOUR_TEXT_REGION 236 24 241 24 51 STRAND 250 24 251 COLOUR_TEXT_REGION 250 24 251 24 51 STRAND 258 24 261 COLOUR_TEXT_REGION 258 24 261 24 51 STRAND 270 24 272 COLOUR_TEXT_REGION 270 24 272 24 51 STRAND 284 24 286 COLOUR_TEXT_REGION 284 24 286 24 51 STRAND 312 24 316 COLOUR_TEXT_REGION 312 24 316 24 51 STRAND 356 24 358 COLOUR_TEXT_REGION 356 24 358 24 51 HELIX 10 24 19 COLOUR_TEXT_REGION 10 24 19 24 50 HELIX 85 24 112 COLOUR_TEXT_REGION 85 24 112 24 50 HELIX 162 24 174 COLOUR_TEXT_REGION 162 24 174 24 50 HELIX 290 24 306 COLOUR_TEXT_REGION 290 24 306 24 50 HELIX 320 24 328 COLOUR_TEXT_REGION 320 24 328 24 50 HELIX 333 24 334 COLOUR_TEXT_REGION 333 24 334 24 50 STRAND 42 25 45 COLOUR_TEXT_REGION 42 25 45 25 51 STRAND 49 25 52 COLOUR_TEXT_REGION 49 25 52 25 51 STRAND 57 25 60 COLOUR_TEXT_REGION 57 25 60 25 51 STRAND 85 25 86 COLOUR_TEXT_REGION 85 25 86 25 51 STRAND 143 25 143 COLOUR_TEXT_REGION 143 25 143 25 51 STRAND 155 25 155 COLOUR_TEXT_REGION 155 25 155 25 51 STRAND 196 25 197 COLOUR_TEXT_REGION 196 25 197 25 51 STRAND 205 25 210 COLOUR_TEXT_REGION 205 25 210 25 51 STRAND 220 25 224 COLOUR_TEXT_REGION 220 25 224 25 51 STRAND 258 25 263 COLOUR_TEXT_REGION 258 25 263 25 51 STRAND 269 25 272 COLOUR_TEXT_REGION 269 25 272 25 51 STRAND 284 25 286 COLOUR_TEXT_REGION 284 25 286 25 51 STRAND 312 25 315 COLOUR_TEXT_REGION 312 25 315 25 51 STRAND 356 25 357 COLOUR_TEXT_REGION 356 25 357 25 51 HELIX 9 25 19 COLOUR_TEXT_REGION 9 25 19 25 50 HELIX 72 25 72 COLOUR_TEXT_REGION 72 25 72 25 50 HELIX 90 25 112 COLOUR_TEXT_REGION 90 25 112 25 50 HELIX 160 25 175 COLOUR_TEXT_REGION 160 25 175 25 50 HELIX 234 25 240 COLOUR_TEXT_REGION 234 25 240 25 50 HELIX 247 25 250 COLOUR_TEXT_REGION 247 25 250 25 50 HELIX 291 25 296 COLOUR_TEXT_REGION 291 25 296 25 50 HELIX 298 25 304 COLOUR_TEXT_REGION 298 25 304 25 50 HELIX 325 25 328 COLOUR_TEXT_REGION 325 25 328 25 50