Jpred secondary structure prediction results

QUERY           : MEVCLPNGHQVVDLINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQDYVDVQFADRVTAHWKRGMLSFVAQMHEMMNDVSPDDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLDTKLDQYWTALNLMIDSSDLIPNFMMRDPSHAFNGVKLGGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRKELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVEAVNHAWGVEKIRYALGPGGMTGWYNRTMQQAPIVLTPAALTMFPDTIKFGDLNYPVMIGDPMILG : QUERY 
UniRef90_A0MQ41 : MEVRVPNFHSFVEGITSSYLKTPACWNAQTAWDTVTFHVPDVIRVGNAYCCSQCCGVLGTLPADGNYFPHHKCHQQQYRTDTPLLRYVGRTTEHLLDQYAVALESIADHYDEISQRMVDEPENDEVAPLDI----VTRTESIRSDKTVWTYPLERRSD-DSRRDIAASCWR-MVDASSTLPNCLVSPSLHSRS--VFGQMQTTTTIYDVAASGKAVKFSPMVATLSQRDAGPVK-----LANADPAEGVYSFWTSHF--AFSPLIGGVGITGQARESYHHVGHPVIGSGKKASHYRNLFMESWRGWSKSAFACATGESRLRGHARTMLGRSPNVQSGAVLTSLQKTTKF---------------- : UniRef90_A0MQ41
UniRef90_Q6SZ69 : MEVRVPNFHSFVEGITSSYIRAPACWNAKTMWNIETFHLPDVIKVGNAYCCSQCCGVLGAPPSDGNYFPHHKCHQQQYRSDTPLLRYVGRTTEHLLDQYAVTL----QTIADYYDEASHRVADEPE---EDTIAALDIVTRTESIRSDWTYPLERRSD-DSRRDIAASIWT-MIDASATLPDCLVSPSLHSRH--IFDQMLTTTSIYDVAASGKTARFSPMVAALPQRAAGPI-----TLSDADPLDGVATFWSPQF--ALSPMIGGVGITGQARESYHHVGHPVIGSGKKVSHYRNIFMDAWRGWSKSSFTCAAGESRLRGHARTML------------------------------------- : UniRef90_Q6SZ69
UniRef90_E5FPX8 : MEVRVPNFHSFIEGITTSYLRSPACWNSKTLWDIEEFHTPDVIRVGNAYCCTQCCGVLGAPPSDGNCFPHHKCHQQQYRTETPLMRYVGRATEQLLDQYAIALHVIADYYDEASKQPQDIAETESIAPLDI----VTRTESIRSDRAVWTYPLERR-GYDARHEIARAGWK-MIDASSTLPDCLVSNMLHTRH--VFSQMLTTTTIYDVAVTGKAVKFSPMVVTMPTRGDGAV---ALSRGNLD--HDVEDCWMDGFC-ILPPIIGSVGITGQFERSYHNFGHPMVGSGKKASHYRNLFMESWRGWSKSSFTCAVGESRLRGHARTMFGR-----SLPDICDFEETTHVGQSSAPL--------- : UniRef90_E5FPX8
UniRef90_A1E2A8 : MEVRVPNFHSFVEGITSSYIRAPACWDSRSAWDSDIFHDPDVIKVGGAYCCTQCCGVLGAPPTDGVCFPHHKCHQQLSRVDNPLLRFVGRTTEHLLDQYAVILSCIADHYEKAAQS---RTSMCGG----DALMSLDIIVRTESLRTDWTAPLERRES-DARSDIATAGWR-MIDASSTVPDCVVSNLLHTRH--VFSQMLTTTTAYDVAVTGKPAKFSPLVAVMPTRDSGVI---SLTRDNWD--HDVEDAWLNGF--AFSPIIGGVGISGQFDRGAHNYGHPMVGSGKKVSHYRNLFMEVCRGWSMSAFTCAVGELRLRGQARTMLGRA-----------LPDVCDFGETIH----------- : UniRef90_A1E2A8
UniRef90_B6REZ6 : MEVRAPNFHSIVEAIIASYEQRPMTWNARTYWSDLEFNDPDVIKVGNAYCCAGCCGVLGAAKTGDEAFPHHRCHQLHTRFNTPILR-------HVKMGRLT--DLLREGYALWLTGLADHID---EADTADDIEPYDARVMTESIRTDKIKPDVWKTSLDNQTMTNAMMIHDAMDRHSLIPNCFLNEALHAPSAI--TPVYDNYTIFDVXAHGRPARLQPMVSAMPKMDRNTGQVRMTHYHTKTSVIDSIS---CNSVTITSPILGGCSVLANKPEPTTWLGRPMISTGKKAEQNRNIFMEMQLGYSAPGFRTMVGESRLLGHHRTMLGSSALISIP---------------------------- : UniRef90_B6REZ6
UniRef90_X5CT94 : MEVRAPNFHSVIEAIFDSYNTRPATWNAHTEWKSLEFHEPDVIKVGNAYCCAACCGVLGYIPAGQTPFPHHRCHQQNTRFTSPFLRKVGRVTENYAMWLTSLSEHMSQAND---ADDLTDFDARVMTECVRSDRPINP--------EAWKTAIE--NDVMTNAHLIYDAMSSI--STDVLPSCFMSEKLHTRNAIV--PVMDTMSIYDVVTLGRPARLQPLLAALPIMPSEKHDGEFRLARSHTPASMTRVLSDTS-GVITSPVLGGLSVIAYAPEPTTALGTPVVSSGKKAEHYRNIFTDMAHGWSTSLYRTMIGESRLSGHHRTMLDTAPLFMTEPA-------------------------- : UniRef90_X5CT94
UniRef90_A6Y7R6 : MEVRTPNFHSFVESAYSSYLTRPDTWNPSTLWETGQFVTPDVIRLGNAYCCAQCCGVLGYRPINLYPFPHHRCHQLHRRETSPLLRTTDMVREHYAVWLQSLVDHLSDEKNI---QDKEPMSSRVASEVLRNDLDLSPHDSARSIH----------DSMD--------KLSEVAGTHGLLPDCLLNVATHDHTALKMTAPVLN-----IYDQLDNARRSVLSATVTQMPKETADAHKLQGHVTKEVAAAALLKPEHV--IVTPIMAGLPVLARSHQPSLRVGMPLVESTQKASLYRSLPHQLAHGYHSDTFRTMFGESRLIGHHRTMLCTLPAIETSP--------------------------- : UniRef90_A6Y7R6
UniRef90_I6M4J5 : ---------------TSSYLKTPACWNAQTAWDTVTFHVPDVIRVGNAYCCSQCCGVLGTLPADGNYFPHHKCHQQQYRTDTPLLRYVGRTTEHLLDQYAVALESIADHYDEISQRMVDEPENDEVAPLDI----VTRTESIRSDKTVWTYPLERRSD-DSRRDIAASCW-IMIDASSTLPNCLVSPSLHSRS--VFGQMQTTTTIYDVAASGKAAKFSPMVATLSQRDAGPV------------------------------------------------------------------------------------------------------------------------------------ : UniRef90_I6M4J5
UniRef90_Q80FJ2 : MELPLVQHHSVIEAIRNSYNNIIPSYKTGKGWIVNEYTEPEIVKVGQAYCCAQCCGVLGAPPKEGEEFYHHKCHARYNVTNTPLNNFAGRITRHIFDAHCAALTHHIQDITDADDREADTLIHSYTLPDDMTVKVVEPLLDARVDPEFWKEPFHHVSGNDTLANNLTGRLAEILDGAKMWSSVLSPPETHMEN--VLRGMQIDANPYEWQVTRSGAGRGGFI--FSEGKEVSYSFRKSDLRVTD------SLKLDNHC--LSPMPAGVMVQLRATVDGPPSPSVYICDKEKAEHYRNIMKNILAGWHQSA------------------------------------------------------- : UniRef90_Q80FJ2
UniRef90_W8P1B1 : MELPLIQHHSVIEGIRHSYDNIIPSFRTGEGWIVDTYKDPEIVKVGQAYCCSQCCGVLHYPPKEGEEFYHHKCHARYGPSNTPLVAFTGRITRHIFDSHCAALTHHIQDIADVEGSEGDELSLPDGLELRLVDGDYDTEVPTKCDVDFWKQPFVSGDDILANDKIVTKRLGEILD-QGQIWSSMLSPPETLITDVVRGTQLFATP-YDWQRTGNTAS--------SIGGRGGSEGKSTVFSFKKNALSVGSLKLDSHC--LSPMPAGVMVQLRAMMDGPPAPKLYICDRDKATHYRQVMKGMLQGWHAAAKSVAF-PLGVDRHEQMLHDQA---------------------------------- : UniRef90_W8P1B1
UniRef90_O72465 : MEVPLVHAHSVLEGLSSALHDVIPAYSSTYGWLGDEFAYPDVVKLGNAYVCTRCCGVLHYGEMGGNPFIRHICKQTHSYDTSPDLYKLSRITRRIYDAHVNILTWIAN--NIITDKTNENSATTPGLEIGSEIPDGYKHKSRLTDGKNFVEPLPSFPYASTSEHQYGTVWNERFE-QFFVQRELVSPRRKIRTLLRFFINVLSDEYYPVFIPGGEGKWSPMPSMIPQLVRGTSPGNDTFFSEHHGDIKKYLLGTD---LIVAPLAGNVPLIIGPLDDRYSRPMPYVRETQKA-LCNNLLVRITKGWSQDQYTCPMGVIATEKWFSSVL------------------------------------- : UniRef90_O72465

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241-------251-------261-------271-------281-------291-------301-------311-------321-------331-------341-------351-------361-- :
OrigSeq         : MEVCLPNGHQVVDLINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQDYVDVQFADRVTAHWKRGMLSFVAQMHEMMNDVSPDDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLDTKLDQYWTALNLMIDSSDLIPNFMMRDPSHAFNGVKLGGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRKELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVEAVNHAWGVEKIRYALGPGGMTGWYNRTMQQAPIVLTPAALTMFPDTIKFGDLNYPVMIGDPMILG : OrigSeq

Jnet            : --------HHHHHHHHHHH----------------------EEEE--EEEEE----EEE-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------EE-----------------HHHHHHHHHHHHHH-------------------EEE---------EEEEE--------EEEEE----------HHEEE----------EE------EEEEE-------EEE-----------EEE---HHHHHHHHHHHHHHHH------EEEE------HHHHHHH---------------------------EEE------- : Jnet
jhmm            : ---------HHHHHHHHHH----------------------EEEE--EEEE-----EE--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------EE-----------------HHHHHHHHHHHHH--------------------EEE-----------EEE---------EEE------------EEEEEE--------EE------EEEE--------EEE-----------EEE---HHHHHHHHHHHHHHHHH-----EEEEE---HHHHHHHHH----HH---------------------EEE------- : jhmm
jpssm           : --------HHHHHHHHHHH----------------------EEEE---EEEE----EEEE-----------H------------EE---HHHHHHHHHHHHHHHHHHHHHHH------------------------------E-----------E----HHHHHHHHHHHHHHHH--------------------EE-------EEEEEE---------EEEEE---------HHHHHHH------HHHH-------EEEEEE-----EEEE-----------EEE----HHHHHH-HHHHHHH-------EEEE---------HHHH---------------------------EE-------- : jpssm

Lupas 14        : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : --BBBB-BBBBBBBB--BB--BBBBB-B---B----B--BBBBBBBBBBBBBBBBBBBBBB------BBBBBB--------BBBB-BBBBBBBBBBBBBBBBBBBBB--B--B-------B----BB-B---B--B-----B-BB---B--BB-----BB--B-BBB-BBB-BB----BBBBBBB---BB---BB-B---B--B-BB-BB-----B-BBBBBBBBB-B----B-B----------B-BBBBB---BBBBBBBBBBBBBBBBB-----B-BBBBBBB----BB--B--BB--BB-BB----B-BBBB--BB--BB-BBB--BBBBBB-BBBBBB--BB-BB-B-BBBBBB--B--- : Jnet_25
Jnet_5          : ----------BB-BB-------B-B----------------BB-B--BBBB--BBBBB--------------B-----------B-----BB--B----B-BB--B-----------------------------------------------------------B---B--BB-----B--BB----------B----------B--BB----------BB--B--------------------B-----------B-BBBBB-B-B-B-B---------B-BBB--------B--BB--B--------B--B----------------B--------B---------------BBB------- : Jnet_5
Jnet_0          : -----------------------------------------B-----B--B--B---B-----------------------------B--B------------------------------------------------------------------------------B-------------------------------------------------------------------------------------------------B-B-B-----------------------------------------B--------------------------------------------------- : Jnet_0
Jnet Rel        : 99988763178999998851577777777777666777763587547168811660682247777766520114677777776422422689999999999999999998630577777777777766424556677655300132356776403255130899999999998710577777656677777764220366777310013215777764307871136787631100110137764022110578885477610013551575267777533321324672556642438888753188762123207773324311211255236652122566654567777623315776688 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.