SILENT_MODE
BLOCK_FILE jp_BH7n2JY.concise.blc
MAX_NSEQ 157
MAX_INPUT_LEN 159
OUTPUT_FILE jp_BH7n2JY.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 148 146   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 147 148 156 H SPACE
SUB_CHARS 1 147 148 156 E SPACE
SUB_CHARS 1 147 148 156 - SPACE
STRAND 6 150 8
COLOUR_TEXT_REGION 6 150 8 150 51
STRAND 19 150 26
COLOUR_TEXT_REGION 19 150 26 150 51
STRAND 47 150 49
COLOUR_TEXT_REGION 47 150 49 150 51
STRAND 53 150 57
COLOUR_TEXT_REGION 53 150 57 150 51
STRAND 59 150 60
COLOUR_TEXT_REGION 59 150 60 150 51
STRAND 73 150 78
COLOUR_TEXT_REGION 73 150 78 150 51
STRAND 131 150 137
COLOUR_TEXT_REGION 131 150 137 150 51
STRAND 141 150 145
COLOUR_TEXT_REGION 141 150 145 150 51
HELIX 30 150 41
COLOUR_TEXT_REGION 30 150 41 150 50
HELIX 82 150 93
COLOUR_TEXT_REGION 82 150 93 150 50
HELIX 99 150 106
COLOUR_TEXT_REGION 99 150 106 150 50
STRAND 6 155 8
COLOUR_TEXT_REGION 6 155 8 155 51
STRAND 11 155 11
COLOUR_TEXT_REGION 11 155 11 155 51
STRAND 19 155 26
COLOUR_TEXT_REGION 19 155 26 155 51
STRAND 47 155 49
COLOUR_TEXT_REGION 47 155 49 155 51
STRAND 53 155 60
COLOUR_TEXT_REGION 53 155 60 155 51
STRAND 73 155 78
COLOUR_TEXT_REGION 73 155 78 155 51
STRAND 98 155 98
COLOUR_TEXT_REGION 98 155 98 155 51
STRAND 131 155 137
COLOUR_TEXT_REGION 131 155 137 155 51
STRAND 141 155 145
COLOUR_TEXT_REGION 141 155 145 155 51
HELIX 12 155 15
COLOUR_TEXT_REGION 12 155 15 155 50
HELIX 30 155 41
COLOUR_TEXT_REGION 30 155 41 155 50
HELIX 82 155 93
COLOUR_TEXT_REGION 82 155 93 155 50
HELIX 99 155 106
COLOUR_TEXT_REGION 99 155 106 155 50
STRAND 6 156 9
COLOUR_TEXT_REGION 6 156 9 156 51
STRAND 19 156 26
COLOUR_TEXT_REGION 19 156 26 156 51
STRAND 47 156 50
COLOUR_TEXT_REGION 47 156 50 156 51
STRAND 72 156 78
COLOUR_TEXT_REGION 72 156 78 156 51
STRAND 119 156 119
COLOUR_TEXT_REGION 119 156 119 156 51
STRAND 132 156 137
COLOUR_TEXT_REGION 132 156 137 156 51
STRAND 141 156 146
COLOUR_TEXT_REGION 141 156 146 156 51
HELIX 30 156 40
COLOUR_TEXT_REGION 30 156 40 156 50
HELIX 83 156 94
COLOUR_TEXT_REGION 83 156 94 156 50
HELIX 101 156 106
COLOUR_TEXT_REGION 101 156 106 156 50