SILENT_MODE
BLOCK_FILE jp_RdO2fRC.concise.blc
MAX_NSEQ 1319
MAX_INPUT_LEN 1321
OUTPUT_FILE jp_RdO2fRC.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 94 1308   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1309 94 1318 H SPACE
SUB_CHARS 1 1309 94 1318 E SPACE
SUB_CHARS 1 1309 94 1318 - SPACE
STRAND 5 1312 10
COLOUR_TEXT_REGION 5 1312 10 1312 51
STRAND 21 1312 25
COLOUR_TEXT_REGION 21 1312 25 1312 51
STRAND 30 1312 34
COLOUR_TEXT_REGION 30 1312 34 1312 51
STRAND 42 1312 46
COLOUR_TEXT_REGION 42 1312 46 1312 51
HELIX 50 1312 59
COLOUR_TEXT_REGION 50 1312 59 1312 50
HELIX 63 1312 65
COLOUR_TEXT_REGION 63 1312 65 1312 50
HELIX 72 1312 90
COLOUR_TEXT_REGION 72 1312 90 1312 50
STRAND 5 1317 10
COLOUR_TEXT_REGION 5 1317 10 1317 51
STRAND 14 1317 14
COLOUR_TEXT_REGION 14 1317 14 1317 51
STRAND 21 1317 25
COLOUR_TEXT_REGION 21 1317 25 1317 51
STRAND 30 1317 33
COLOUR_TEXT_REGION 30 1317 33 1317 51
STRAND 43 1317 46
COLOUR_TEXT_REGION 43 1317 46 1317 51
HELIX 50 1317 59
COLOUR_TEXT_REGION 50 1317 59 1317 50
HELIX 64 1317 65
COLOUR_TEXT_REGION 64 1317 65 1317 50
HELIX 72 1317 90
COLOUR_TEXT_REGION 72 1317 90 1317 50
STRAND 6 1318 11
COLOUR_TEXT_REGION 6 1318 11 1318 51
STRAND 21 1318 25
COLOUR_TEXT_REGION 21 1318 25 1318 51
STRAND 30 1318 34
COLOUR_TEXT_REGION 30 1318 34 1318 51
STRAND 42 1318 46
COLOUR_TEXT_REGION 42 1318 46 1318 51
HELIX 50 1318 65
COLOUR_TEXT_REGION 50 1318 65 1318 50
HELIX 73 1318 90
COLOUR_TEXT_REGION 73 1318 90 1318 50