QUERY                  : MVSKLSQLQTEMLAALLESGLSKEALIQALG : QUERY 
UniRef90_F7DT96        : MVSKLSQLQAELLTALLESGLSKETLIRALG : UniRef90_F7DT96
UniRef90_Q91910        : MVSKLSPLQQELLNALLNSGVTKEDLIQAL- : UniRef90_Q91910
UniRef90_W5LQX0        : MVSKLTSLQQELLSALLDSGLTKDALLRAL- : UniRef90_W5LQX0
UniRef90_UPI0003504A40 : MVSQLSALQRELLGALLSSGATKEGLIRAL- : UniRef90_UPI0003504A40
UniRef90_B7ZRG9        : MASQLSYLQRELLQALLESGVTKEALKKAL- : UniRef90_B7ZRG9
UniRef90_H3BER6        : MVTKLTSLQQEILNSLLGSGLSKPTLIEAL- : UniRef90_H3BER6
UniRef90_Q6EY60        : MVPDLSPLQKELLQALLNSGLTKEELIQWL- : UniRef90_Q6EY60
UniRef90_I3K608        : MVTPMGRAQQELLNALLDSGVTKDDLIQAL- : UniRef90_I3K608
UniRef90_UPI0004625C42 : MVSRLSALQEELLKALLASGLSRQALVRAV- : UniRef90_UPI0004625C42
UniRef90_E0YMK3        : MVSKLSQLQTELLAALLESGLSKEAVINSMG : UniRef90_E0YMK3

                       : 1---------11--------21-------- :
OrigSeq                : MVSKLSQLQTEMLAALLESGLSKEALIQALG : OrigSeq

Jnet                   : ----HHHHHHHHHHHHHH----HHHHHHH-- : Jnet
jhmm                   : ----HHHHHHHHHHHHHH----HHHHHHH-- : jhmm
jpssm                  : ----HHHHHHHHHHHHHH----HHHHHHH-- : jpssm

Lupas 14               : ----cccccccccccccc------------- : Lupas 14
Lupas 21               : ------------------------------- : Lupas 21
Lupas 28               : ------------------------------- : Lupas 28

Jnet_25                : ----B--BB--BB-BBB---B----BB--B- : Jnet_25
Jnet_5                 : -----------BB--B---------B----- : Jnet_5
Jnet_0                 : ------------------------------- : Jnet_0
Jnet Rel               : 9874289999999998744875688887279 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.