SILENT_MODE
BLOCK_FILE jp_Vjs0wIs.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_Vjs0wIs.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 65 18   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 19 65 28 H SPACE
SUB_CHARS 1 19 65 28 E SPACE
SUB_CHARS 1 19 65 28 - SPACE
STRAND 21 22 23
COLOUR_TEXT_REGION 21 22 23 22 51
STRAND 29 22 33
COLOUR_TEXT_REGION 29 22 33 22 51
STRAND 37 22 40
COLOUR_TEXT_REGION 37 22 40 22 51
STRAND 43 22 47
COLOUR_TEXT_REGION 43 22 47 22 51
STRAND 51 22 55
COLOUR_TEXT_REGION 51 22 55 22 51
STRAND 58 22 63
COLOUR_TEXT_REGION 58 22 63 22 51
HELIX 4 22 8
COLOUR_TEXT_REGION 4 22 8 22 50
STRAND 21 27 23
COLOUR_TEXT_REGION 21 27 23 27 51
STRAND 29 27 33
COLOUR_TEXT_REGION 29 27 33 27 51
STRAND 37 27 40
COLOUR_TEXT_REGION 37 27 40 27 51
STRAND 43 27 47
COLOUR_TEXT_REGION 43 27 47 27 51
STRAND 51 27 63
COLOUR_TEXT_REGION 51 27 63 27 51
HELIX 4 27 8
COLOUR_TEXT_REGION 4 27 8 27 50
STRAND 17 28 17
COLOUR_TEXT_REGION 17 28 17 28 51
STRAND 21 28 23
COLOUR_TEXT_REGION 21 28 23 28 51
STRAND 29 28 34
COLOUR_TEXT_REGION 29 28 34 28 51
STRAND 37 28 40
COLOUR_TEXT_REGION 37 28 40 28 51
STRAND 43 28 47
COLOUR_TEXT_REGION 43 28 47 28 51
STRAND 52 28 54
COLOUR_TEXT_REGION 52 28 54 28 51
STRAND 58 28 63
COLOUR_TEXT_REGION 58 28 63 28 51
HELIX 4 28 8
COLOUR_TEXT_REGION 4 28 8 28 50