SILENT_MODE
BLOCK_FILE jp_FTlXSKq.concise.blc
MAX_NSEQ 152
MAX_INPUT_LEN 154
OUTPUT_FILE jp_FTlXSKq.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 98 141   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 142 98 151 H SPACE
SUB_CHARS 1 142 98 151 E SPACE
SUB_CHARS 1 142 98 151 - SPACE
STRAND 63 145 67
COLOUR_TEXT_REGION 63 145 67 145 51
HELIX 4 145 26
COLOUR_TEXT_REGION 4 145 26 145 50
HELIX 29 145 36
COLOUR_TEXT_REGION 29 145 36 145 50
HELIX 40 145 47
COLOUR_TEXT_REGION 40 145 47 145 50
HELIX 51 145 58
COLOUR_TEXT_REGION 51 145 58 145 50
HELIX 72 145 78
COLOUR_TEXT_REGION 72 145 78 145 50
HELIX 85 145 97
COLOUR_TEXT_REGION 85 145 97 145 50
STRAND 63 150 67
COLOUR_TEXT_REGION 63 150 67 150 51
HELIX 5 150 26
COLOUR_TEXT_REGION 5 150 26 150 50
HELIX 29 150 36
COLOUR_TEXT_REGION 29 150 36 150 50
HELIX 40 150 47
COLOUR_TEXT_REGION 40 150 47 150 50
HELIX 51 150 58
COLOUR_TEXT_REGION 51 150 58 150 50
HELIX 72 150 78
COLOUR_TEXT_REGION 72 150 78 150 50
HELIX 86 150 97
COLOUR_TEXT_REGION 86 150 97 150 50
STRAND 63 151 66
COLOUR_TEXT_REGION 63 151 66 151 51
HELIX 4 151 26
COLOUR_TEXT_REGION 4 151 26 151 50
HELIX 30 151 36
COLOUR_TEXT_REGION 30 151 36 151 50
HELIX 40 151 47
COLOUR_TEXT_REGION 40 151 47 151 50
HELIX 51 151 58
COLOUR_TEXT_REGION 51 151 58 151 50
HELIX 72 151 79
COLOUR_TEXT_REGION 72 151 79 151 50
HELIX 84 151 97
COLOUR_TEXT_REGION 84 151 97 151 50